SMTL ID : 9bvf.1

Identification of multiple ligand hotspots on SOS2, compound 6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

monomer

Ligands

1 x 01: 4-({4-[(3S)-3-methyl-1,4-diazepan-1-yl]quinazolin-2-yl}amino)phenol

01.1: 9 residues within 4Å: Chain A: V.343, Y.349, D.352, F.355, E.356, R.363, L.366, D.367, V.370 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:V.343, A:Y.349, A:Y.349, A:F.355, A:F.355, A:R.363, A:L.366, A:V.370 Hydrogen bonds: A:D.352, A:E.356, A:D.367 Water bridges: A:E.356 pi-Cation interactions: A:F.355, A:R.363

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 2 residues within 4Å: Chain A: H.160, H.164 No protein-ligand interaction detected (PLIP)

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: Q.359, E.360, R.361 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.360, A:R.361 Water bridges: A:R.361 Salt bridges: A:R.361

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zak, K.M. et al., Discovery of Small Molecules that Bind to Son of Sevenless 2 (SOS2). J.Med.Chem. (2025)

Release Date

2025-02-05

Peptides

Son of sevenless homolog 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Son of sevenless homolog 2

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