SMTL ID : 9c0w.1

AzrC from Bacillus pacificus ROC1 bound to malachite green

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 18 residues within 4Å: Chain A: N.30, S.37, F.38, G.39, P.121, M.122, W.123, N.124, F.125, A.166, T.167, G.168, G.169, Y.171, M.206, N.207 Chain B: I.72 Ligands: MGR.2 15 PLIP interactions: 14 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:W.123, B:I.72 Hydrogen bonds: A:N.30, A:N.30, A:F.38, A:G.39, A:M.122, A:N.124, A:F.125, A:G.168, A:G.169, A:Y.171, A:Y.171, A:N.207 Water bridges: A:S.37 FMN.3: 17 residues within 4Å: Chain A: F.77 Chain B: N.30, S.37, F.38, G.39, P.121, M.122, W.123, N.124, F.125, A.166, T.167, G.168, G.169, Y.171, M.206, N.207 16 PLIP interactions: 15 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.30, B:N.30, B:F.38, B:G.39, B:M.122, B:M.122, B:N.124, B:F.125, B:G.168, B:G.169, B:Y.171, B:Y.171, B:N.207, B:N.207 Water bridges: B:S.37 Hydrophobic interactions: A:F.77

1 x MGR: MALACHITE GREEN(Non-covalent)

MGR.2: 10 residues within 4Å: Chain A: F.125, G.169, V.170, Y.171, Y.176, A.208 Chain B: Y.147, P.152, F.192 Ligands: FMN.1 8 PLIP interactions: 3 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:Y.147, B:P.152, B:F.192, A:F.125, A:Y.171, A:Y.176, A:Y.176, A:A.208

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bibi, S. et al., Isolation, identification, and characterisation of the malachite green detoxifying bacterial strain Bacillus pacificus ROC1 and the azoreductase AzrC. Sci Rep (2025)

Release Date

2025-02-05

Peptides

FMN-dependent NADH:quinone oxidoreductase 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

FMN-dependent NADH:quinone oxidoreductase 3