SMTL ID : 9c17.1

Human biliverdin IX beta reductase in complex with NADP and BCT001028

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.63 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 25 residues within 4Å: Chain A: G.14, T.16, G.17, Q.18, T.19, R.39, R.43, D.58, V.59, L.78, L.79, G.80, T.81, R.82, V.90, M.91, C.113, T.114, S.115, H.136, P.155, P.156, H.157, I.158 Ligands: 01.2 33 PLIP interactions: 33 interactions with chain A Hydrophobic interactions: A:I.158, A:I.158 Hydrogen bonds: A:G.14, A:T.16, A:T.16, A:Q.18, A:Q.18, A:T.19, A:T.19, A:R.39, A:D.58, A:V.59, A:L.79, A:G.80, A:R.82, A:I.158 Water bridges: A:G.14, A:A.15, A:T.16, A:G.17, A:G.20, A:R.39, A:R.39, A:R.39, A:R.39, A:T.81, A:T.81, A:H.157 Salt bridges: A:R.39, A:R.43, A:R.82, A:R.82 pi-Cation interactions: A:R.39

1 x 01: 4-[(4R,7P)-7-(2-chlorophenyl)imidazo[5,1-b][1,3]thiazol-5-yl]benzoic acid

01.2: 16 residues within 4Å: Chain A: R.82, N.83, L.85, S.115, A.116, F.117, W.120, L.129, V.132, T.133, H.136, P.155, P.156, H.157, R.178 Ligands: NAP.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.85, A:L.129 Hydrogen bonds: A:H.157 Water bridges: A:Y.204 Salt bridges: A:R.178 pi-Stacking: A:F.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nesbitt, N.M. et al., Small molecule BLVRB redox inhibitor promotes megakaryocytopoiesis and stress thrombopoiesis in vivo. Nat Commun (2025)

Release Date

2025-04-23

Peptides

Flavin reductase (NADPH): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Flavin reductase (NADPH)

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