SMTL ID : 9c1e.1

Mink RyR3 in closed conformation

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain B: C.4780, C.4783, H.4800, H.4805 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.4780, B:C.4783, B:H.4800, B:H.4805 ZN.3: 4 residues within 4Å: Chain D: C.4780, C.4783, H.4800, H.4805 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.4780, D:C.4783, D:H.4800, D:H.4805 ZN.5: 4 residues within 4Å: Chain F: C.4780, C.4783, H.4800, H.4805 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.4780, F:C.4783, F:H.4800, F:H.4805 ZN.7: 4 residues within 4Å: Chain H: C.4780, C.4783, H.4800, H.4805 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:C.4780, H:C.4783, H:H.4800, H:H.4805

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain B: R.265, I.289, R.409, R.412 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain D: R.265, I.289, R.409, R.412 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain F: R.265, I.289, R.409, R.412 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain H: R.265, I.289, R.409, R.412 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Y.S. et al., Cryo-EM investigation of ryanodine receptor type 3. Nat Commun (2024)

Release Date

2024-10-16

Peptides

Peptidyl-prolyl cis-trans isomerase FKBP1B: ACEG
Ryanodine receptor 3: BDFH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

G
G

B
B

D
D

F
F

H
H

Membrane

We predict this structure to be a membrane protein.
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Peptidyl-prolyl cis-trans isomerase FKBP1B

Ryanodine receptor 3

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