SMTL ID : 9c1k.1

Rhesus rotavirus (empty structure at 2.68 Angstrom resolution)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-19-2-19-mer

Ligands

19 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.69 Ligand excluded by PLIP NAG.6: 1 residues within 4Å: Chain B: N.69 Ligand excluded by PLIP NAG.34: 1 residues within 4Å: Chain R: N.69 Ligand excluded by PLIP NAG.39: 1 residues within 4Å: Chain S: N.69 Ligand excluded by PLIP NAG.44: 1 residues within 4Å: Chain T: N.69 Ligand excluded by PLIP NAG.49: 1 residues within 4Å: Chain U: N.69 Ligand excluded by PLIP NAG.54: 1 residues within 4Å: Chain V: N.69 Ligand excluded by PLIP NAG.59: 1 residues within 4Å: Chain W: N.69 Ligand excluded by PLIP NAG.64: 1 residues within 4Å: Chain X: N.69 Ligand excluded by PLIP NAG.69: 1 residues within 4Å: Chain Y: N.69 Ligand excluded by PLIP NAG.74: 1 residues within 4Å: Chain Z: N.69 Ligand excluded by PLIP NAG.79: 1 residues within 4Å: Chain 0: N.69 Ligand excluded by PLIP NAG.84: 1 residues within 4Å: Chain 1: N.69 Ligand excluded by PLIP NAG.99: 1 residues within 4Å: Chain 8: N.69 Ligand excluded by PLIP NAG.104: 1 residues within 4Å: Chain 9: N.69 Ligand excluded by PLIP NAG.109: 1 residues within 4Å: Chain a: N.69 Ligand excluded by PLIP NAG.114: 1 residues within 4Å: Chain b: N.69 Ligand excluded by PLIP NAG.119: 1 residues within 4Å: Chain c: N.69 Ligand excluded by PLIP NAG.124: 1 residues within 4Å: Chain d: N.69 Ligand excluded by PLIP

76 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: D.151, E.154, E.222, L.224 Chain B: K.290 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.151, A:D.151, A:E.154, A:E.222 CA.3: 6 residues within 4Å: Chain A: Q.177, K.183, D.228, V.229, D.231 Chain B: D.301 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Metal complexes: A:D.228, A:V.229, A:D.231, B:D.301 CA.4: 5 residues within 4Å: Chain A: G.206, C.207, T.214, E.216 Chain B: D.95 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Metal complexes: A:G.206, A:T.214, A:E.216, B:D.95 CA.5: 6 residues within 4Å: Chain A: D.270, T.272, D.274, P.275, T.277, A.278 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.270, A:T.272, A:D.274, A:T.277 CA.7: 6 residues within 4Å: Chain 1: K.290 Chain B: D.151, E.154, E.222, L.224, V.225 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.154, B:E.222, B:L.224 CA.8: 6 residues within 4Å: Chain 1: D.301 Chain B: Q.177, K.183, D.228, V.229, D.231 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain 1 Metal complexes: B:D.228, B:V.229, B:D.231, 1:D.301 CA.9: 5 residues within 4Å: Chain 1: D.95 Chain B: G.206, C.207, T.214, E.216 4 PLIP interactions: 1 interactions with chain 1, 3 interactions with chain B Metal complexes: 1:D.95, B:G.206, B:T.214, B:E.216 CA.10: 6 residues within 4Å: Chain B: D.270, T.272, D.274, P.275, T.277, A.278 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.270, B:D.270, B:T.272, B:D.274, B:T.277 CA.35: 5 residues within 4Å: Chain R: D.151, E.154, E.222, L.224, V.225 4 PLIP interactions: 4 interactions with chain R Metal complexes: R:D.151, R:E.154, R:E.222, R:L.224 CA.36: 5 residues within 4Å: Chain R: Q.177, K.183, D.228, V.229, D.231 3 PLIP interactions: 3 interactions with chain R Metal complexes: R:D.228, R:V.229, R:D.231 CA.37: 4 residues within 4Å: Chain R: G.206, C.207, T.214, E.216 3 PLIP interactions: 3 interactions with chain R Metal complexes: R:G.206, R:T.214, R:E.216 CA.38: 6 residues within 4Å: Chain R: D.270, T.272, D.274, P.275, T.277, A.278 5 PLIP interactions: 5 interactions with chain R Metal complexes: R:D.270, R:D.270, R:T.272, R:D.274, R:T.277 CA.40: 6 residues within 4Å: Chain S: D.151, E.154, E.222, L.224, V.225 Chain T: K.290 4 PLIP interactions: 4 interactions with chain S Metal complexes: S:D.151, S:E.154, S:E.222, S:L.224 CA.41: 6 residues within 4Å: Chain S: Q.177, K.183, D.228, V.229, D.231 Chain T: D.301 4 PLIP interactions: 3 interactions with chain S, 1 interactions with chain T Metal complexes: S:D.228, S:V.229, S:D.231, T:D.301 CA.42: 5 residues within 4Å: Chain S: G.206, C.207, T.214, E.216 Chain T: D.95 3 PLIP interactions: 3 interactions with chain S Metal complexes: S:G.206, S:T.214, S:E.216 CA.43: 6 residues within 4Å: Chain S: D.270, T.272, D.274, P.275, T.277, A.278 5 PLIP interactions: 5 interactions with chain S Metal complexes: S:D.270, S:D.270, S:T.272, S:D.274, S:T.277 CA.45: 6 residues within 4Å: Chain T: D.151, E.154, E.222, L.224, V.225 Chain U: K.290 4 PLIP interactions: 4 interactions with chain T Metal complexes: T:D.151, T:E.154, T:E.222, T:L.224 CA.46: 6 residues within 4Å: Chain T: Q.177, K.183, D.228, V.229, D.231 Chain U: D.301 4 PLIP interactions: 1 interactions with chain U, 3 interactions with chain T Metal complexes: U:D.301, T:D.228, T:V.229, T:D.231 CA.47: 5 residues within 4Å: Chain T: G.206, C.207, T.214, E.216 Chain U: D.95 4 PLIP interactions: 3 interactions with chain T, 1 interactions with chain U Metal complexes: T:G.206, T:T.214, T:E.216, U:D.95 CA.48: 6 residues within 4Å: Chain T: D.270, T.272, D.274, P.275, T.277, A.278 5 PLIP interactions: 5 interactions with chain T Metal complexes: T:D.270, T:D.270, T:T.272, T:D.274, T:T.277 CA.50: 6 residues within 4Å: Chain S: K.290 Chain U: D.151, E.154, E.222, L.224, V.225 4 PLIP interactions: 4 interactions with chain U Metal complexes: U:D.151, U:E.154, U:E.222, U:L.224 CA.51: 6 residues within 4Å: Chain S: D.301 Chain U: Q.177, K.183, D.228, V.229, D.231 4 PLIP interactions: 3 interactions with chain U, 1 interactions with chain S Metal complexes: U:D.228, U:V.229, U:D.231, S:D.301 CA.52: 5 residues within 4Å: Chain S: D.95 Chain U: G.206, C.207, T.214, E.216 4 PLIP interactions: 1 interactions with chain S, 3 interactions with chain U Metal complexes: S:D.95, U:G.206, U:T.214, U:E.216 CA.53: 6 residues within 4Å: Chain U: D.270, T.272, D.274, P.275, T.277, A.278 5 PLIP interactions: 5 interactions with chain U Metal complexes: U:D.270, U:D.270, U:T.272, U:D.274, U:T.277 CA.55: 6 residues within 4Å: Chain V: D.151, E.154, E.222, L.224, V.225 Chain W: K.290 4 PLIP interactions: 4 interactions with chain V Metal complexes: V:D.151, V:E.154, V:E.222, V:L.224 CA.56: 6 residues within 4Å: Chain V: Q.177, K.183, D.228, V.229, D.231 Chain W: D.301 4 PLIP interactions: 3 interactions with chain V, 1 interactions with chain W Metal complexes: V:D.228, V:V.229, V:D.231, W:D.301 CA.57: 5 residues within 4Å: Chain V: G.206, C.207, T.214, E.216 Chain W: D.95 4 PLIP interactions: 1 interactions with chain W, 3 interactions with chain V Metal complexes: W:D.95, V:G.206, V:T.214, V:E.216 CA.58: 6 residues within 4Å: Chain V: D.270, T.272, D.274, P.275, T.277, A.278 5 PLIP interactions: 5 interactions with chain V Metal complexes: V:D.270, V:D.270, V:T.272, V:D.274, V:T.277 CA.60: 6 residues within 4Å: Chain W: D.151, E.154, E.222, L.224, V.225 Chain X: K.290 3 PLIP interactions: 3 interactions with chain W Metal complexes: W:E.154, W:E.222, W:L.224 CA.61: 6 residues within 4Å: Chain W: Q.177, K.183, D.228, V.229, D.231 Chain X: D.301 4 PLIP interactions: 3 interactions with chain W, 1 interactions with chain X Metal complexes: W:D.228, W:V.229, W:D.231, X:D.301 CA.62: 5 residues within 4Å: Chain W: G.206, C.207, T.214, E.216 Chain X: D.95 3 PLIP interactions: 3 interactions with chain W Metal complexes: W:G.206, W:T.214, W:E.216 CA.63: 6 residues within 4Å: Chain W: D.270, T.272, D.274, P.275, T.277, A.278 5 PLIP interactions: 5 interactions with chain W Metal complexes: W:D.270, W:D.270, W:T.272, W:D.274, W:T.277 CA.65: 5 residues within 4Å: Chain X: D.151, E.154, E.222, L.224, V.225 4 PLIP interactions: 4 interactions with chain X Metal complexes: X:D.151, X:E.154, X:E.222, X:L.224 CA.66: 6 residues within 4Å: Chain V: D.301 Chain X: Q.177, K.183, D.228, V.229, D.231 4 PLIP interactions: 3 interactions with chain X, 1 interactions with chain V Metal complexes: X:D.228, X:V.229, X:D.231, V:D.301 CA.67: 5 residues within 4Å: Chain V: D.95 Chain X: G.206, C.207, T.214, E.216 4 PLIP interactions: 3 interactions with chain X, 1 interactions with chain V Metal complexes: X:G.206, X:T.214, X:E.216, V:D.95 CA.68: 6 residues within 4Å: Chain X: D.270, T.272, D.274, P.275, T.277, A.278 5 PLIP interactions: 5 interactions with chain X Metal complexes: X:D.270, X:D.270, X:T.272, X:D.274, X:T.277 CA.70: 6 residues within 4Å: Chain Y: D.151, E.154, E.222, L.224, V.225 Chain Z: K.290 4 PLIP interactions: 4 interactions with chain Y Metal complexes: Y:D.151, Y:E.154, Y:E.222, Y:L.224 CA.71: 6 residues within 4Å: Chain Y: Q.177, K.183, D.228, V.229, D.231 Chain Z: D.301 4 PLIP interactions: 3 interactions with chain Y, 1 interactions with chain Z Metal complexes: Y:D.228, Y:V.229, Y:D.231, Z:D.301 CA.72: 5 residues within 4Å: Chain Y: G.206, C.207, T.214, E.216 Chain Z: D.95 4 PLIP interactions: 3 interactions with chain Y, 1 interactions with chain Z Metal complexes: Y:G.206, Y:T.214, Y:E.216, Z:D.95 CA.73: 5 residues within 4Å: Chain Y: D.270, T.272, D.274, P.275, T.277 5 PLIP interactions: 5 interactions with chain Y Metal complexes: Y:D.270, Y:D.270, Y:T.272, Y:D.274, Y:T.277 CA.75: 6 residues within 4Å: Chain 0: K.290 Chain Z: D.151, E.154, E.222, L.224, V.225 4 PLIP interactions: 4 interactions with chain Z Metal complexes: Z:D.151, Z:E.154, Z:E.222, Z:L.224 CA.76: 6 residues within 4Å: Chain 0: D.301 Chain Z: Q.177, K.183, D.228, V.229, D.231 4 PLIP interactions: 3 interactions with chain Z, 1 interactions with chain 0 Metal complexes: Z:D.228, Z:V.229, Z:D.231, 0:D.301 CA.77: 5 residues within 4Å: Chain 0: D.95 Chain Z: G.206, C.207, T.214, E.216 4 PLIP interactions: 1 interactions with chain 0, 3 interactions with chain Z Metal complexes: 0:D.95, Z:G.206, Z:T.214, Z:E.216 CA.78: 5 residues within 4Å: Chain Z: D.270, T.272, D.274, P.275, T.277 5 PLIP interactions: 5 interactions with chain Z Metal complexes: Z:D.270, Z:D.270, Z:T.272, Z:D.274, Z:T.277 CA.80: 5 residues within 4Å: Chain 0: D.151, E.154, E.222, L.224, V.225 4 PLIP interactions: 4 interactions with chain 0 Metal complexes: 0:D.151, 0:E.154, 0:E.222, 0:L.224 CA.81: 6 residues within 4Å: Chain 0: Q.177, K.183, D.228, V.229, D.231 Chain Y: D.301 4 PLIP interactions: 1 interactions with chain Y, 3 interactions with chain 0 Metal complexes: Y:D.301, 0:D.228, 0:V.229, 0:D.231 CA.82: 5 residues within 4Å: Chain 0: G.206, C.207, T.214, E.216 Chain Y: D.95 4 PLIP interactions: 3 interactions with chain 0, 1 interactions with chain Y Metal complexes: 0:G.206, 0:T.214, 0:E.216, Y:D.95 CA.83: 6 residues within 4Å: Chain 0: D.270, T.272, D.274, P.275, T.277, A.278 5 PLIP interactions: 5 interactions with chain 0 Metal complexes: 0:D.270, 0:D.270, 0:T.272, 0:D.274, 0:T.277 CA.85: 6 residues within 4Å: Chain 1: D.151, E.154, E.222, L.224, V.225 Chain A: K.290 4 PLIP interactions: 4 interactions with chain 1 Metal complexes: 1:D.151, 1:E.154, 1:E.222, 1:L.224 CA.86: 6 residues within 4Å: Chain 1: Q.177, K.183, D.228, V.229, D.231 Chain A: D.301 4 PLIP interactions: 3 interactions with chain 1, 1 interactions with chain A Metal complexes: 1:D.228, 1:V.229, 1:D.231, A:D.301 CA.87: 5 residues within 4Å: Chain 1: G.206, C.207, T.214, E.216 Chain A: D.95 4 PLIP interactions: 3 interactions with chain 1, 1 interactions with chain A Metal complexes: 1:G.206, 1:T.214, 1:E.216, A:D.95 CA.88: 6 residues within 4Å: Chain 1: D.270, T.272, D.274, P.275, T.277, A.278 5 PLIP interactions: 5 interactions with chain 1 Metal complexes: 1:D.270, 1:D.270, 1:T.272, 1:D.274, 1:T.277 CA.100: 6 residues within 4Å: Chain 8: D.151, E.154, E.222, L.224, V.225 Chain 9: K.290 4 PLIP interactions: 4 interactions with chain 8 Metal complexes: 8:D.151, 8:E.154, 8:E.222, 8:L.224 CA.101: 6 residues within 4Å: Chain 8: Q.177, K.183, D.228, V.229, D.231 Chain 9: D.301 4 PLIP interactions: 3 interactions with chain 8, 1 interactions with chain 9 Metal complexes: 8:D.228, 8:V.229, 8:D.231, 9:D.301 CA.102: 5 residues within 4Å: Chain 8: G.206, C.207, T.214, E.216 Chain 9: D.95 4 PLIP interactions: 3 interactions with chain 8, 1 interactions with chain 9 Metal complexes: 8:G.206, 8:T.214, 8:E.216, 9:D.95 CA.103: 6 residues within 4Å: Chain 8: D.270, T.272, D.274, P.275, T.277, A.278 5 PLIP interactions: 5 interactions with chain 8 Metal complexes: 8:D.270, 8:D.270, 8:T.272, 8:D.274, 8:T.277 CA.105: 6 residues within 4Å: Chain 9: D.151, E.154, E.222, L.224, V.225 Chain a: K.290 4 PLIP interactions: 4 interactions with chain 9 Metal complexes: 9:D.151, 9:E.154, 9:E.222, 9:L.224 CA.106: 6 residues within 4Å: Chain 9: Q.177, K.183, D.228, V.229, D.231 Chain a: D.301 4 PLIP interactions: 1 interactions with chain a, 3 interactions with chain 9 Metal complexes: a:D.301, 9:D.228, 9:V.229, 9:D.231 CA.107: 5 residues within 4Å: Chain 9: G.206, C.207, T.214, E.216 Chain a: D.95 3 PLIP interactions: 3 interactions with chain 9 Metal complexes: 9:G.206, 9:T.214, 9:E.216 CA.108: 6 residues within 4Å: Chain 9: D.270, T.272, D.274, P.275, T.277, A.278 5 PLIP interactions: 5 interactions with chain 9 Metal complexes: 9:D.270, 9:D.270, 9:T.272, 9:D.274, 9:T.277 CA.110: 5 residues within 4Å: Chain a: D.151, E.154, E.222, L.224, V.225 4 PLIP interactions: 4 interactions with chain a Metal complexes: a:D.151, a:E.154, a:E.222, a:L.224 CA.111: 6 residues within 4Å: Chain 8: D.301 Chain a: Q.177, K.183, D.228, V.229, D.231 4 PLIP interactions: 3 interactions with chain a, 1 interactions with chain 8 Metal complexes: a:D.228, a:V.229, a:D.231, 8:D.301 CA.112: 5 residues within 4Å: Chain 8: D.95 Chain a: G.206, C.207, T.214, E.216 4 PLIP interactions: 3 interactions with chain a, 1 interactions with chain 8 Metal complexes: a:G.206, a:T.214, a:E.216, 8:D.95 CA.113: 6 residues within 4Å: Chain a: D.270, T.272, D.274, P.275, T.277, A.278 5 PLIP interactions: 5 interactions with chain a Metal complexes: a:D.270, a:D.270, a:T.272, a:D.274, a:T.277 CA.115: 6 residues within 4Å: Chain b: D.151, E.154, E.222, L.224, V.225 Chain c: K.290 4 PLIP interactions: 4 interactions with chain b Metal complexes: b:D.151, b:E.154, b:E.222, b:L.224 CA.116: 6 residues within 4Å: Chain b: Q.177, K.183, D.228, V.229, D.231 Chain c: D.301 4 PLIP interactions: 1 interactions with chain c, 3 interactions with chain b Metal complexes: c:D.301, b:D.228, b:V.229, b:D.231 CA.117: 5 residues within 4Å: Chain b: G.206, C.207, T.214, E.216 Chain c: D.95 4 PLIP interactions: 3 interactions with chain b, 1 interactions with chain c Metal complexes: b:G.206, b:T.214, b:E.216, c:D.95 CA.118: 5 residues within 4Å: Chain b: D.270, T.272, D.274, P.275, T.277 5 PLIP interactions: 5 interactions with chain b Metal complexes: b:D.270, b:D.270, b:T.272, b:D.274, b:T.277 CA.120: 6 residues within 4Å: Chain c: D.151, E.154, E.222, L.224, V.225 Chain d: K.290 4 PLIP interactions: 4 interactions with chain c Metal complexes: c:D.151, c:E.154, c:E.222, c:L.224 CA.121: 6 residues within 4Å: Chain c: Q.177, K.183, D.228, V.229, D.231 Chain d: D.301 4 PLIP interactions: 3 interactions with chain c, 1 interactions with chain d Metal complexes: c:D.228, c:V.229, c:D.231, d:D.301 CA.122: 5 residues within 4Å: Chain c: G.206, C.207, T.214, E.216 Chain d: D.95 4 PLIP interactions: 3 interactions with chain c, 1 interactions with chain d Metal complexes: c:G.206, c:T.214, c:E.216, d:D.95 CA.123: 6 residues within 4Å: Chain c: D.270, T.272, D.274, P.275, T.277, A.278 5 PLIP interactions: 5 interactions with chain c Metal complexes: c:D.270, c:D.270, c:T.272, c:D.274, c:T.277 CA.125: 5 residues within 4Å: Chain d: D.151, E.154, E.222, L.224, V.225 4 PLIP interactions: 4 interactions with chain d Metal complexes: d:D.151, d:E.154, d:E.222, d:L.224 CA.126: 6 residues within 4Å: Chain b: D.301 Chain d: Q.177, K.183, D.228, V.229, D.231 4 PLIP interactions: 3 interactions with chain d, 1 interactions with chain b Metal complexes: d:D.228, d:V.229, d:D.231, b:D.301 CA.127: 5 residues within 4Å: Chain b: D.95 Chain d: G.206, C.207, T.214, E.216 4 PLIP interactions: 3 interactions with chain d, 1 interactions with chain b Metal complexes: d:G.206, d:T.214, d:E.216, b:D.95 CA.128: 6 residues within 4Å: Chain d: D.270, T.272, D.274, P.275, T.277, A.278 5 PLIP interactions: 5 interactions with chain d Metal complexes: d:D.270, d:D.270, d:T.272, d:D.274, d:T.277

26 x ZN: ZINC ION(Non-covalent)

ZN.11: 7 residues within 4Å: Chain E: H.153, K.154 Chain F: H.153, K.154 Chain G: H.153, K.154 Ligands: CL.12 3 PLIP interactions: 1 interactions with chain F, 1 interactions with chain G, 1 interactions with chain E Metal complexes: F:H.153, G:H.153, E:H.153 ZN.13: 4 residues within 4Å: Chain E: L.166, H.173, S.240, A.241 1 PLIP interactions: 1 interactions with chain E Metal complexes: E:H.173 ZN.14: 4 residues within 4Å: Chain F: L.166, H.173, S.240, A.241 1 PLIP interactions: 1 interactions with chain F Metal complexes: F:H.173 ZN.15: 5 residues within 4Å: Chain G: L.166, S.169, H.173, S.240, A.241 1 PLIP interactions: 1 interactions with chain G Metal complexes: G:H.173 ZN.16: 7 residues within 4Å: Chain H: H.153, K.154 Chain I: H.153, K.154 Chain J: H.153, K.154 Ligands: CL.17 3 PLIP interactions: 1 interactions with chain J, 1 interactions with chain I, 1 interactions with chain H Metal complexes: J:H.153, I:H.153, H:H.153 ZN.18: 5 residues within 4Å: Chain H: L.166, S.169, H.173, S.240, A.241 1 PLIP interactions: 1 interactions with chain H Metal complexes: H:H.173 ZN.19: 4 residues within 4Å: Chain I: L.166, H.173, S.240, A.241 1 PLIP interactions: 1 interactions with chain I Metal complexes: I:H.173 ZN.20: 4 residues within 4Å: Chain J: L.166, H.173, S.240, A.241 1 PLIP interactions: 1 interactions with chain J Metal complexes: J:H.173 ZN.21: 7 residues within 4Å: Chain K: H.153, K.154 Chain L: H.153, K.154 Chain M: H.153, K.154 Ligands: CL.22 3 PLIP interactions: 1 interactions with chain L, 1 interactions with chain M, 1 interactions with chain K Metal complexes: L:H.153, M:H.153, K:H.153 ZN.23: 5 residues within 4Å: Chain K: L.166, S.169, H.173, S.240, A.241 1 PLIP interactions: 1 interactions with chain K Metal complexes: K:H.173 ZN.24: 4 residues within 4Å: Chain L: L.166, H.173, S.240, A.241 1 PLIP interactions: 1 interactions with chain L Metal complexes: L:H.173 ZN.25: 6 residues within 4Å: Chain M: L.166, S.169, H.173, S.240, A.241, W.247 1 PLIP interactions: 1 interactions with chain M Metal complexes: M:H.173 ZN.26: 7 residues within 4Å: Chain N: H.153, K.154 Chain O: H.153, K.154 Chain P: H.153, K.154 Ligands: CL.29 3 PLIP interactions: 1 interactions with chain N, 1 interactions with chain O, 1 interactions with chain P Metal complexes: N:H.153, O:H.153, P:H.153 ZN.27: 5 residues within 4Å: Chain 0: Y.53 Chain N: L.166, H.173, S.240, A.241 1 PLIP interactions: 1 interactions with chain N Metal complexes: N:H.173 ZN.28: 6 residues within 4Å: Chain O: L.166, S.169, H.173, S.240, A.241, W.247 1 PLIP interactions: 1 interactions with chain O Metal complexes: O:H.173 ZN.30: 4 residues within 4Å: Chain P: L.166, H.173, S.240, A.241 1 PLIP interactions: 1 interactions with chain P Metal complexes: P:H.173 ZN.31: 3 residues within 4Å: Chain Q: H.153, K.154 Ligands: CL.32 1 PLIP interactions: 1 interactions with chain Q Metal complexes: Q:H.153 ZN.33: 5 residues within 4Å: Chain Q: L.166, S.169, H.173, S.240, A.241 1 PLIP interactions: 1 interactions with chain Q Metal complexes: Q:H.173 ZN.89: 7 residues within 4Å: Chain 2: H.153, K.154 Chain 3: H.153, K.154 Chain 4: H.153, K.154 Ligands: CL.90 3 PLIP interactions: 1 interactions with chain 3, 1 interactions with chain 4, 1 interactions with chain 2 Metal complexes: 3:H.153, 4:H.153, 2:H.153 ZN.91: 5 residues within 4Å: Chain 2: L.166, S.169, H.173, S.240, A.241 1 PLIP interactions: 1 interactions with chain 2 Metal complexes: 2:H.173 ZN.92: 4 residues within 4Å: Chain 3: L.166, H.173, S.240, A.241 1 PLIP interactions: 1 interactions with chain 3 Metal complexes: 3:H.173 ZN.93: 4 residues within 4Å: Chain 4: L.166, H.173, S.240, A.241 1 PLIP interactions: 1 interactions with chain 4 Metal complexes: 4:H.173 ZN.94: 7 residues within 4Å: Chain 5: H.153, K.154 Chain 6: H.153, K.154 Chain 7: H.153, K.154 Ligands: CL.95 3 PLIP interactions: 1 interactions with chain 7, 1 interactions with chain 5, 1 interactions with chain 6 Metal complexes: 7:H.153, 5:H.153, 6:H.153 ZN.96: 6 residues within 4Å: Chain 5: L.166, S.169, H.173, S.240, A.241, W.247 1 PLIP interactions: 1 interactions with chain 5 Metal complexes: 5:H.173 ZN.97: 5 residues within 4Å: Chain 6: L.166, H.173, S.240, A.241, W.247 1 PLIP interactions: 1 interactions with chain 6 Metal complexes: 6:H.173 ZN.98: 5 residues within 4Å: Chain 7: L.166, S.169, H.173, S.240, A.241 1 PLIP interactions: 1 interactions with chain 7 Metal complexes: 7:H.173

7 x CL: CHLORIDE ION(Non-functional Binders)

CL.12: 7 residues within 4Å: Chain E: H.153, K.154 Chain F: H.153, K.154 Chain G: H.153, K.154 Ligands: ZN.11 Ligand excluded by PLIP CL.17: 7 residues within 4Å: Chain H: H.153, K.154 Chain I: H.153, K.154 Chain J: H.153, K.154 Ligands: ZN.16 Ligand excluded by PLIP CL.22: 7 residues within 4Å: Chain K: H.153, K.154 Chain L: H.153, K.154 Chain M: H.153, K.154 Ligands: ZN.21 Ligand excluded by PLIP CL.29: 7 residues within 4Å: Chain N: H.153, K.154 Chain O: H.153, K.154 Chain P: H.153, K.154 Ligands: ZN.26 Ligand excluded by PLIP CL.32: 3 residues within 4Å: Chain Q: H.153, K.154 Ligands: ZN.31 Ligand excluded by PLIP CL.90: 7 residues within 4Å: Chain 2: H.153, K.154 Chain 3: H.153, K.154 Chain 4: H.153, K.154 Ligands: ZN.89 Ligand excluded by PLIP CL.95: 7 residues within 4Å: Chain 5: H.153, K.154 Chain 6: H.153, K.154 Chain 7: H.153, K.154 Ligands: ZN.94 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jenni, S. et al., Rotavirus structure. To Be Published

Release Date

2025-04-30

Peptides

Outer capsid glycoprotein VP7: ABRSTUVWXYZ0189abcd
Inner capsid protein VP2: CD
Intermediate capsid protein VP6: EFGHIJKLMNOPQ234567

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
0

B
1

R
P

S
Q

T
R

U
S

V
T

W
U

X
V

Y
W

Z
X

0
Y

1
Z

8
t

9
u

a
v

b
w

c
x

d
y

C
A

D
B

E
C

F
D

G
E

H
F

I
G

J
H

K
I

L
J

M
K

N
L

O
M

P
N

Q
O

2
f

3
g

4
h

5
i

6
j

7
k

Outer capsid glycoprotein VP7

Inner capsid protein VP2

Intermediate capsid protein VP6

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