SMTL ID : 9c1w.1

Structure of AKT2 with compound 3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x XOO: 4-{2-[({4-[(2P)-2-(2-aminopyridin-3-yl)-5-phenyl-3H-imidazo[4,5-b]pyridin-3-yl]phenyl}methyl)amino]ethyl}-2-hydroxybenzaldehyde

XOO.1: 23 residues within 4Å: Chain A: E.16, Y.17, N.52, N.53, Q.78, W.79, I.83, T.206, L.211, T.212, L.265, R.268, V.270, V.271, Y.272, R.273, D.274, I.290, T.291, D.292 Ligands: EDO.4, EDO.5, EDO.6 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:N.52, A:Q.78, A:W.79, A:W.79, A:I.83, A:L.211, A:L.265, A:V.270, A:V.270, A:Y.272, A:I.290 Hydrogen bonds: A:Y.17, A:T.212, A:T.212, A:Y.272 Water bridges: A:D.292 pi-Stacking: A:W.79

6 x EDO: 1,2-ETHANEDIOL

EDO.2: 10 residues within 4Å: Chain A: K.13, F.26, F.34, I.35, G.36, F.54, R.85, N.324, D.325 Ligands: EDO.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.36, A:R.85, A:N.324 EDO.3: 5 residues within 4Å: Chain A: R.207, H.208, P.209, Y.264, V.417 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.207 EDO.4: 6 residues within 4Å: Chain A: N.52, Q.204, R.268, V.270 Ligands: XOO.1, EDO.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.268, A:R.268 Water bridges: A:N.52 EDO.5: 7 residues within 4Å: Chain A: L.77, Q.78, W.79, R.201, Q.204 Ligands: XOO.1, EDO.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.77, A:W.79 EDO.6: 11 residues within 4Å: Chain A: K.13, E.16, N.53, F.54, Q.78, I.83, R.85, R.273, Y.326 Ligands: XOO.1, EDO.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.273, A:R.273 EDO.7: 6 residues within 4Å: Chain A: F.237, S.241, L.277, E.341, G.345, R.346 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.241, A:G.345

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Craven, G.B. et al., Mutant-selective AKT inhibition through lysine targeting and neo-zinc chelation. Nature (2024)

Release Date

2024-09-04

Peptides

RAC-beta serine/threonine-protein kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RAC-beta serine/threonine-protein kinase