SMTL ID : 9c4g.1

Cutibacterium acnes 50S ribosomal subunit with Clindamycin bound

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

247 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 2 residues within 4Å: Chain A: Q.60, P.86 No protein-ligand interaction detected (PLIP) MG.2: 2 residues within 4Å: Chain 1: G.1842 Chain B: H.146 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.146 MG.3: 3 residues within 4Å: Chain 1: A.1266 Chain H: E.25 Chain N: T.80 2 PLIP interactions: 2 interactions with chain H Metal complexes: H:E.25, H:E.25 MG.8: 1 residues within 4Å: Chain 1: C.2124 No protein-ligand interaction detected (PLIP) MG.9: 3 residues within 4Å: Chain 1: G.1348, U.1349, U.1831 No protein-ligand interaction detected (PLIP) MG.10: 1 residues within 4Å: Chain 1: A.1607 No protein-ligand interaction detected (PLIP) MG.11: 4 residues within 4Å: Chain 1: C.763, G.861, A.2253, C.2254 No protein-ligand interaction detected (PLIP) MG.12: 3 residues within 4Å: Chain 1: A.2152, A.2153, U.2154 No protein-ligand interaction detected (PLIP) MG.13: 1 residues within 4Å: Chain 1: G.2222 No protein-ligand interaction detected (PLIP) MG.14: 1 residues within 4Å: Chain 1: G.26 No protein-ligand interaction detected (PLIP) MG.15: 1 residues within 4Å: Chain 1: G.2672 No protein-ligand interaction detected (PLIP) MG.16: 1 residues within 4Å: Chain 1: U.1320 No protein-ligand interaction detected (PLIP) MG.17: 2 residues within 4Å: Chain 1: A.1418, U.1786 No protein-ligand interaction detected (PLIP) MG.18: 2 residues within 4Å: Chain 1: A.1953, G.2158 No protein-ligand interaction detected (PLIP) MG.19: 2 residues within 4Å: Chain 1: G.2600, U.2601 No protein-ligand interaction detected (PLIP) MG.20: 1 residues within 4Å: Chain 1: A.1853 No protein-ligand interaction detected (PLIP) MG.21: 5 residues within 4Å: Chain 1: C.823, A.824, U.1961, U.1962, A.1967 No protein-ligand interaction detected (PLIP) MG.22: 4 residues within 4Å: Chain 1: G.199, A.206, G.2424, U.2425 No protein-ligand interaction detected (PLIP) MG.23: 2 residues within 4Å: Chain 1: G.2128, U.2139 No protein-ligand interaction detected (PLIP) MG.24: 2 residues within 4Å: Chain 1: G.82, U.382 No protein-ligand interaction detected (PLIP) MG.25: 2 residues within 4Å: Chain 1: U.885, G.886 No protein-ligand interaction detected (PLIP) MG.26: 2 residues within 4Å: Chain 1: U.1403, G.1404 No protein-ligand interaction detected (PLIP) MG.27: 4 residues within 4Å: Chain 1: A.1030, C.1031, C.1045, U.1046 No protein-ligand interaction detected (PLIP) MG.28: 3 residues within 4Å: Chain 1: A.536, U.537, G.561 No protein-ligand interaction detected (PLIP) MG.29: 4 residues within 4Å: Chain 1: G.2236, C.2757, G.2758, A.2759 No protein-ligand interaction detected (PLIP) MG.30: 4 residues within 4Å: Chain 1: C.816, C.817, G.845, A.846 No protein-ligand interaction detected (PLIP) MG.31: 1 residues within 4Å: Chain 1: G.2868 No protein-ligand interaction detected (PLIP) MG.32: 2 residues within 4Å: Chain 1: A.1974, G.1975 No protein-ligand interaction detected (PLIP) MG.33: 3 residues within 4Å: Chain 1: A.1073, G.1241, C.1242 No protein-ligand interaction detected (PLIP) MG.34: 2 residues within 4Å: Chain 1: G.764, G.765 No protein-ligand interaction detected (PLIP) MG.35: 1 residues within 4Å: Chain 1: A.878 No protein-ligand interaction detected (PLIP) MG.36: 2 residues within 4Å: Chain 1: G.1604, G.1605 No protein-ligand interaction detected (PLIP) MG.37: 4 residues within 4Å: Chain 1: U.1344, A.1345, C.2189, A.2231 No protein-ligand interaction detected (PLIP) MG.38: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.39: 1 residues within 4Å: Chain 1: A.1064 No protein-ligand interaction detected (PLIP) MG.40: 1 residues within 4Å: Chain 1: A.1862 No protein-ligand interaction detected (PLIP) MG.41: 4 residues within 4Å: Chain 1: U.815, C.816, A.846, G.848 No protein-ligand interaction detected (PLIP) MG.42: 4 residues within 4Å: Chain 1: G.1423, A.1454, U.1455, G.1456 No protein-ligand interaction detected (PLIP) MG.43: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.44: 2 residues within 4Å: Chain 1: U.2211, A.2212 No protein-ligand interaction detected (PLIP) MG.45: 3 residues within 4Å: Chain 1: A.1379, U.1380, G.1827 No protein-ligand interaction detected (PLIP) MG.46: 1 residues within 4Å: Chain 1: G.1394 No protein-ligand interaction detected (PLIP) MG.47: 3 residues within 4Å: Chain 1: C.648, U.649 Chain H: E.25 No protein-ligand interaction detected (PLIP) MG.48: 1 residues within 4Å: Chain 1: A.2187 No protein-ligand interaction detected (PLIP) MG.49: 3 residues within 4Å: Chain 1: G.499, U.2588, G.2589 No protein-ligand interaction detected (PLIP) MG.50: 1 residues within 4Å: Chain 1: G.2566 No protein-ligand interaction detected (PLIP) MG.51: 2 residues within 4Å: Chain 1: U.2569, A.2570 No protein-ligand interaction detected (PLIP) MG.52: 2 residues within 4Å: Chain 1: G.2433, G.2434 No protein-ligand interaction detected (PLIP) MG.53: 2 residues within 4Å: Chain 1: G.1096 Chain F: Q.144 No protein-ligand interaction detected (PLIP) MG.54: 3 residues within 4Å: Chain 1: G.2239, G.2240, A.2241 No protein-ligand interaction detected (PLIP) MG.55: 3 residues within 4Å: Chain 1: A.1330, A.1331, G.1333 No protein-ligand interaction detected (PLIP) MG.56: 1 residues within 4Å: Chain 1: A.2184 No protein-ligand interaction detected (PLIP) MG.57: 2 residues within 4Å: Chain 1: G.908, G.1049 No protein-ligand interaction detected (PLIP) MG.58: 1 residues within 4Å: Chain 1: G.1636 No protein-ligand interaction detected (PLIP) MG.59: 1 residues within 4Å: Chain 1: C.1474 No protein-ligand interaction detected (PLIP) MG.60: 1 residues within 4Å: Chain 1: C.256 No protein-ligand interaction detected (PLIP) MG.61: 4 residues within 4Å: Chain 1: A.198, G.199, G.884, U.885 No protein-ligand interaction detected (PLIP) MG.62: 1 residues within 4Å: Chain 1: G.769 No protein-ligand interaction detected (PLIP) MG.63: 1 residues within 4Å: Chain 1: A.857 No protein-ligand interaction detected (PLIP) MG.64: 2 residues within 4Å: Chain 1: A.1435, G.1436 No protein-ligand interaction detected (PLIP) MG.65: 2 residues within 4Å: Chain 1: C.1790, U.1791 No protein-ligand interaction detected (PLIP) MG.66: 2 residues within 4Å: Chain 1: G.2007 Chain A: H.53 No protein-ligand interaction detected (PLIP) MG.67: 4 residues within 4Å: Chain 1: C.2689, C.2755, G.2756, C.2757 No protein-ligand interaction detected (PLIP) MG.68: 3 residues within 4Å: Chain 1: U.1389, C.1409, C.1410 No protein-ligand interaction detected (PLIP) MG.69: 3 residues within 4Å: Chain 1: G.903, A.1266, G.1267 No protein-ligand interaction detected (PLIP) MG.70: 3 residues within 4Å: Chain 1: U.488, A.2272, U.2273 No protein-ligand interaction detected (PLIP) MG.71: 1 residues within 4Å: Chain 1: A.2528 No protein-ligand interaction detected (PLIP) MG.72: 2 residues within 4Å: Chain 1: C.1854, U.1855 No protein-ligand interaction detected (PLIP) MG.73: 1 residues within 4Å: Chain 1: A.384 No protein-ligand interaction detected (PLIP) MG.74: 1 residues within 4Å: Chain 1: A.1289 No protein-ligand interaction detected (PLIP) MG.75: 5 residues within 4Å: Chain 1: G.2868, U.2869, G.2903, G.2904, C.2905 No protein-ligand interaction detected (PLIP) MG.76: 3 residues within 4Å: Chain 1: G.2764, G.2765, G.2790 No protein-ligand interaction detected (PLIP) MG.77: 2 residues within 4Å: Chain 1: A.1848, A.1849 No protein-ligand interaction detected (PLIP) MG.78: 5 residues within 4Å: Chain 1: U.911, U.912, G.2610, G.2611, A.2612 No protein-ligand interaction detected (PLIP) MG.79: 1 residues within 4Å: Chain 1: A.2073 No protein-ligand interaction detected (PLIP) MG.80: 2 residues within 4Å: Chain 1: G.199, U.209 No protein-ligand interaction detected (PLIP) MG.81: 2 residues within 4Å: Chain 1: A.1084, G.1085 No protein-ligand interaction detected (PLIP) MG.82: 1 residues within 4Å: Chain 1: G.1959 No protein-ligand interaction detected (PLIP) MG.83: 2 residues within 4Å: Chain 1: C.1996, G.1997 No protein-ligand interaction detected (PLIP) MG.84: 2 residues within 4Å: Chain 1: G.570, U.571 No protein-ligand interaction detected (PLIP) MG.85: 3 residues within 4Å: Chain 1: A.1603, G.1604, G.1605 No protein-ligand interaction detected (PLIP) MG.86: 2 residues within 4Å: Chain 1: A.657, G.2218 No protein-ligand interaction detected (PLIP) MG.87: 2 residues within 4Å: Chain 1: A.661, U.2200 No protein-ligand interaction detected (PLIP) MG.88: 2 residues within 4Å: Chain 1: A.2245, C.2625 No protein-ligand interaction detected (PLIP) MG.89: 3 residues within 4Å: Chain 1: G.2929, U.2936, C.2937 No protein-ligand interaction detected (PLIP) MG.90: 2 residues within 4Å: Chain 1: G.2471, A.2567 No protein-ligand interaction detected (PLIP) MG.91: 1 residues within 4Å: Chain 1: U.608 No protein-ligand interaction detected (PLIP) MG.92: 3 residues within 4Å: Chain 1: U.651, A.1056 Chain N: K.79 No protein-ligand interaction detected (PLIP) MG.93: 2 residues within 4Å: Chain 1: A.1058, G.1059 No protein-ligand interaction detected (PLIP) MG.94: 2 residues within 4Å: Chain 1: G.903, G.1264 No protein-ligand interaction detected (PLIP) MG.95: 2 residues within 4Å: Chain 1: G.500, G.2589 No protein-ligand interaction detected (PLIP) MG.96: 2 residues within 4Å: Chain 1: U.2613, A.2614 No protein-ligand interaction detected (PLIP) MG.97: 2 residues within 4Å: Chain 1: G.2600, U.2601 No protein-ligand interaction detected (PLIP) MG.98: 2 residues within 4Å: Chain 1: C.872, U.875 No protein-ligand interaction detected (PLIP) MG.99: 4 residues within 4Å: Chain 1: A.835, A.836, G.1797, A.1798 No protein-ligand interaction detected (PLIP) MG.100: 2 residues within 4Å: Chain 1: G.2215, C.2681 No protein-ligand interaction detected (PLIP) MG.101: 1 residues within 4Å: Chain 1: A.2209 No protein-ligand interaction detected (PLIP) MG.102: 1 residues within 4Å: Chain 1: A.1860 No protein-ligand interaction detected (PLIP) MG.103: 1 residues within 4Å: Chain 1: A.2082 No protein-ligand interaction detected (PLIP) MG.104: 2 residues within 4Å: Chain 1: C.1374, C.1823 No protein-ligand interaction detected (PLIP) MG.105: 1 residues within 4Å: Chain 1: G.2531 No protein-ligand interaction detected (PLIP) MG.106: 3 residues within 4Å: Chain 1: G.1955, C.1957, A.1969 No protein-ligand interaction detected (PLIP) MG.107: 3 residues within 4Å: Chain 1: A.2700, U.2701, A.2723 No protein-ligand interaction detected (PLIP) MG.108: 3 residues within 4Å: Chain 1: A.1342, U.1344, U.2797 No protein-ligand interaction detected (PLIP) MG.109: 3 residues within 4Å: Chain 1: C.2249, C.2430, U.2431 No protein-ligand interaction detected (PLIP) MG.110: 2 residues within 4Å: Chain 1: G.1346, A.2188 No protein-ligand interaction detected (PLIP) MG.111: 3 residues within 4Å: Chain 1: U.1470, A.1471, C.1788 No protein-ligand interaction detected (PLIP) MG.112: 3 residues within 4Å: Chain 1: A.1848, G.1851, G.2175 No protein-ligand interaction detected (PLIP) MG.113: 2 residues within 4Å: Chain 1: G.916, A.1028 No protein-ligand interaction detected (PLIP) MG.114: 2 residues within 4Å: Chain 1: A.2893, G.2896 No protein-ligand interaction detected (PLIP) MG.115: 2 residues within 4Å: Chain 1: G.42, U.523 No protein-ligand interaction detected (PLIP) MG.116: 2 residues within 4Å: Chain 1: A.707, G.708 No protein-ligand interaction detected (PLIP) MG.117: 1 residues within 4Å: Chain 1: G.2553 No protein-ligand interaction detected (PLIP) MG.118: 2 residues within 4Å: Chain 1: A.2534, G.2535 No protein-ligand interaction detected (PLIP) MG.119: 5 residues within 4Å: Chain 1: A.1464, G.1465, U.1472, U.1473, C.1474 No protein-ligand interaction detected (PLIP) MG.120: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.121: 3 residues within 4Å: Chain 1: G.227, C.515, U.516 No protein-ligand interaction detected (PLIP) MG.122: 3 residues within 4Å: Chain 1: G.2636, G.2637, C.2678 No protein-ligand interaction detected (PLIP) MG.123: 1 residues within 4Å: Chain 1: G.3026 No protein-ligand interaction detected (PLIP) MG.124: 2 residues within 4Å: Chain 1: G.552, G.554 No protein-ligand interaction detected (PLIP) MG.125: 2 residues within 4Å: Chain 1: G.2193, U.2194 No protein-ligand interaction detected (PLIP) MG.126: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.127: 2 residues within 4Å: Chain 1: A.1825, G.1826 No protein-ligand interaction detected (PLIP) MG.128: 3 residues within 4Å: Chain 1: G.2244, C.2683, G.2684 No protein-ligand interaction detected (PLIP) MG.129: 2 residues within 4Å: Chain 1: C.950, C.991 No protein-ligand interaction detected (PLIP) MG.130: 4 residues within 4Å: Chain 1: A.1429, A.1430, G.1431, C.1452 No protein-ligand interaction detected (PLIP) MG.131: 2 residues within 4Å: Chain 1: G.947, A.994 No protein-ligand interaction detected (PLIP) MG.132: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.133: 3 residues within 4Å: Chain 1: G.869, G.2770, A.2771 No protein-ligand interaction detected (PLIP) MG.134: 2 residues within 4Å: Chain 1: A.2449, G.2452 No protein-ligand interaction detected (PLIP) MG.135: 1 residues within 4Å: Chain 1: G.79 No protein-ligand interaction detected (PLIP) MG.136: 2 residues within 4Å: Chain 1: U.659, A.2685 No protein-ligand interaction detected (PLIP) MG.137: 4 residues within 4Å: Chain 1: U.1389, C.1390, C.1391, G.1408 No protein-ligand interaction detected (PLIP) MG.138: 2 residues within 4Å: Chain 1: U.1082, C.1237 No protein-ligand interaction detected (PLIP) MG.139: 1 residues within 4Å: Chain 1: G.201 No protein-ligand interaction detected (PLIP) MG.140: 5 residues within 4Å: Chain 1: C.1089, C.1090, A.1092, A.1093 Chain F: K.39 No protein-ligand interaction detected (PLIP) MG.141: 3 residues within 4Å: Chain 1: G.614, C.615, A.616 No protein-ligand interaction detected (PLIP) MG.142: 3 residues within 4Å: Chain 1: A.1073, U.1074, G.1263 No protein-ligand interaction detected (PLIP) MG.143: 5 residues within 4Å: Chain 1: G.2629, A.2630, A.2679, C.2680, C.2681 No protein-ligand interaction detected (PLIP) MG.144: 3 residues within 4Å: Chain 1: C.825, A.1966, A.1967 No protein-ligand interaction detected (PLIP) MG.145: 3 residues within 4Å: Chain 1: G.1955, A.1956, G.2011 No protein-ligand interaction detected (PLIP) MG.146: 2 residues within 4Å: Chain 1: G.2011, G.2155 No protein-ligand interaction detected (PLIP) MG.147: 2 residues within 4Å: Chain 1: G.2151, G.2774 No protein-ligand interaction detected (PLIP) MG.148: 3 residues within 4Å: Chain 1: C.30, G.1277, U.1316 No protein-ligand interaction detected (PLIP) MG.149: 1 residues within 4Å: Chain 1: A.657 No protein-ligand interaction detected (PLIP) MG.150: 1 residues within 4Å: Chain 1: U.1026 No protein-ligand interaction detected (PLIP) MG.151: 2 residues within 4Å: Chain 1: G.916, G.1027 No protein-ligand interaction detected (PLIP) MG.152: 3 residues within 4Å: Chain 1: G.1027, A.1028, G.1029 No protein-ligand interaction detected (PLIP) MG.153: 3 residues within 4Å: Chain 1: A.202, A.204, C.205 No protein-ligand interaction detected (PLIP) MG.154: 2 residues within 4Å: Chain 1: U.2869, G.2870 No protein-ligand interaction detected (PLIP) MG.155: 1 residues within 4Å: Chain 1: G.2779 No protein-ligand interaction detected (PLIP) MG.156: 2 residues within 4Å: Chain 1: C.474, G.475 No protein-ligand interaction detected (PLIP) MG.157: 5 residues within 4Å: Chain 1: U.1106, G.1107, G.1108, G.1109, C.1218 No protein-ligand interaction detected (PLIP) MG.158: 2 residues within 4Å: Chain 1: C.316, G.317 No protein-ligand interaction detected (PLIP) MG.159: 4 residues within 4Å: Chain 1: G.1395, U.1396, C.1406, U.1407 No protein-ligand interaction detected (PLIP) MG.160: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.161: 1 residues within 4Å: Chain 1: C.919 No protein-ligand interaction detected (PLIP) MG.162: 2 residues within 4Å: Chain 1: A.2450, G.2451 No protein-ligand interaction detected (PLIP) MG.163: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.164: 2 residues within 4Å: Chain 1: A.1986, G.1987 No protein-ligand interaction detected (PLIP) MG.165: 1 residues within 4Å: Chain 1: U.1340 No protein-ligand interaction detected (PLIP) MG.166: 2 residues within 4Å: Chain 1: G.2770, A.2771 No protein-ligand interaction detected (PLIP) MG.167: 1 residues within 4Å: Chain 1: A.1930 No protein-ligand interaction detected (PLIP) MG.168: 4 residues within 4Å: Chain 1: A.1963, C.1964, C.1965, A.1966 No protein-ligand interaction detected (PLIP) MG.169: 1 residues within 4Å: Chain 1: G.1032 No protein-ligand interaction detected (PLIP) MG.170: 1 residues within 4Å: Chain 1: U.1344 No protein-ligand interaction detected (PLIP) MG.171: 4 residues within 4Å: Chain 1: A.1853, C.1854, U.1855, G.2732 No protein-ligand interaction detected (PLIP) MG.172: 3 residues within 4Å: Chain 1: G.225, A.226, G.227 No protein-ligand interaction detected (PLIP) MG.173: 2 residues within 4Å: Chain 1: C.2798, C.2799 No protein-ligand interaction detected (PLIP) MG.174: 3 residues within 4Å: Chain 1: G.653, A.2630, C.2681 No protein-ligand interaction detected (PLIP) MG.175: 1 residues within 4Å: Chain 1: G.563 No protein-ligand interaction detected (PLIP) MG.176: 4 residues within 4Å: Chain 1: C.2177, U.2178, C.2179, C.2180 No protein-ligand interaction detected (PLIP) MG.177: 1 residues within 4Å: Chain 1: A.1240 No protein-ligand interaction detected (PLIP) MG.178: 2 residues within 4Å: Chain 1: U.1883, A.1885 No protein-ligand interaction detected (PLIP) MG.179: 3 residues within 4Å: Chain 1: A.2121, C.2140, C.2141 No protein-ligand interaction detected (PLIP) MG.180: 1 residues within 4Å: Chain 1: G.1453 No protein-ligand interaction detected (PLIP) MG.181: 3 residues within 4Å: Chain 1: G.2820, A.2821, G.2822 No protein-ligand interaction detected (PLIP) MG.182: 2 residues within 4Å: Chain 1: U.1389, U.1412 No protein-ligand interaction detected (PLIP) MG.183: 1 residues within 4Å: Chain 1: A.1792 No protein-ligand interaction detected (PLIP) MG.184: 3 residues within 4Å: Chain 1: A.868, G.869, A.2771 No protein-ligand interaction detected (PLIP) MG.185: 3 residues within 4Å: Chain 1: C.1054, G.1055, G.1057 No protein-ligand interaction detected (PLIP) MG.186: 4 residues within 4Å: Chain 1: G.592, A.593, U.1311, G.1312 No protein-ligand interaction detected (PLIP) MG.187: 1 residues within 4Å: Chain 1: G.2269 No protein-ligand interaction detected (PLIP) MG.188: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.189: 2 residues within 4Å: Chain 1: U.2864, G.2903 No protein-ligand interaction detected (PLIP) MG.190: 4 residues within 4Å: Chain 1: U.322, G.459, C.510, A.511 No protein-ligand interaction detected (PLIP) MG.191: 3 residues within 4Å: Chain 1: C.1795, G.1797, C.1799 No protein-ligand interaction detected (PLIP) MG.192: 1 residues within 4Å: Chain 1: A.3030 No protein-ligand interaction detected (PLIP) MG.193: 3 residues within 4Å: Chain 1: U.892, G.2628, G.2684 No protein-ligand interaction detected (PLIP) MG.194: 3 residues within 4Å: Chain 1: A.1111, G.1208, A.1209 No protein-ligand interaction detected (PLIP) MG.195: 1 residues within 4Å: Chain 1: G.1617 No protein-ligand interaction detected (PLIP) MG.196: 2 residues within 4Å: Chain 1: A.2234, G.2760 No protein-ligand interaction detected (PLIP) MG.197: 5 residues within 4Å: Chain 1: G.388, U.389, A.395, G.397, G.398 No protein-ligand interaction detected (PLIP) MG.198: 2 residues within 4Å: Chain 1: G.2131, G.2132 No protein-ligand interaction detected (PLIP) MG.199: 2 residues within 4Å: Chain 1: U.1046, C.2680 No protein-ligand interaction detected (PLIP) MG.200: 4 residues within 4Å: Chain 1: C.597, C.598, U.599, G.600 No protein-ligand interaction detected (PLIP) MG.201: 5 residues within 4Å: Chain 1: G.1386, G.1387, U.1786, A.1787, C.1788 No protein-ligand interaction detected (PLIP) MG.202: 2 residues within 4Å: Chain 1: G.1096, A.1227 No protein-ligand interaction detected (PLIP) MG.203: 1 residues within 4Å: Chain 1: G.267 No protein-ligand interaction detected (PLIP) MG.204: 1 residues within 4Å: Chain 1: A.2225 No protein-ligand interaction detected (PLIP) MG.205: 2 residues within 4Å: Chain 1: C.1943, U.2894 No protein-ligand interaction detected (PLIP) MG.206: 4 residues within 4Å: Chain 1: U.481, U.482, C.497, G.498 No protein-ligand interaction detected (PLIP) MG.207: 2 residues within 4Å: Chain 1: A.1674, A.1675 No protein-ligand interaction detected (PLIP) MG.208: 1 residues within 4Å: Chain 1: G.2566 No protein-ligand interaction detected (PLIP) MG.209: 2 residues within 4Å: Chain 1: G.2018, A.2153 No protein-ligand interaction detected (PLIP) MG.210: 4 residues within 4Å: Chain 1: C.619, G.644, G.2218, C.2219 No protein-ligand interaction detected (PLIP) MG.211: 1 residues within 4Å: Chain 1: G.2232 No protein-ligand interaction detected (PLIP) MG.212: 4 residues within 4Å: Chain 1: A.770, U.771, G.856, A.857 No protein-ligand interaction detected (PLIP) MG.213: 4 residues within 4Å: Chain 1: C.821, C.822, U.1805, G.1806 No protein-ligand interaction detected (PLIP) MG.214: 4 residues within 4Å: Chain 1: C.1382, A.1471, A.1787, C.1788 No protein-ligand interaction detected (PLIP) MG.215: 1 residues within 4Å: Chain 1: U.2936 No protein-ligand interaction detected (PLIP) MG.216: 2 residues within 4Å: Chain 1: C.902, G.1264 No protein-ligand interaction detected (PLIP) MG.217: 3 residues within 4Å: Chain 1: A.1376, A.1819, U.1820 No protein-ligand interaction detected (PLIP) MG.218: 1 residues within 4Å: Chain 1: C.2173 No protein-ligand interaction detected (PLIP) MG.219: 2 residues within 4Å: Chain 1: G.1285, G.1286 No protein-ligand interaction detected (PLIP) MG.220: 1 residues within 4Å: Chain 1: A.887 No protein-ligand interaction detected (PLIP) MG.221: 3 residues within 4Å: Chain 1: A.480, U.481, U.482 No protein-ligand interaction detected (PLIP) MG.222: 1 residues within 4Å: Chain 1: G.2406 No protein-ligand interaction detected (PLIP) MG.223: 1 residues within 4Å: Chain 1: G.1219 No protein-ligand interaction detected (PLIP) MG.224: 4 residues within 4Å: Chain 1: U.2257, G.2420, G.2424, U.2425 No protein-ligand interaction detected (PLIP) MG.225: 2 residues within 4Å: Chain 1: G.539, G.541 No protein-ligand interaction detected (PLIP) MG.226: 2 residues within 4Å: Chain 1: G.539, G.542 No protein-ligand interaction detected (PLIP) MG.227: 2 residues within 4Å: Chain 1: U.119, G.121 No protein-ligand interaction detected (PLIP) MG.228: 3 residues within 4Å: Chain 1: U.2256, G.2421 Chain A: P.228 No protein-ligand interaction detected (PLIP) MG.229: 2 residues within 4Å: Chain 1: G.259, U.752 No protein-ligand interaction detected (PLIP) MG.230: 3 residues within 4Å: Chain 1: A.197, A.198, A.211 No protein-ligand interaction detected (PLIP) MG.231: 4 residues within 4Å: Chain 1: G.668, A.669, U.1326, G.1327 No protein-ligand interaction detected (PLIP) MG.232: 1 residues within 4Å: Chain 1: U.1026 No protein-ligand interaction detected (PLIP) MG.233: 1 residues within 4Å: Chain 1: A.1328 No protein-ligand interaction detected (PLIP) MG.234: 1 residues within 4Å: Chain 1: G.759 No protein-ligand interaction detected (PLIP) MG.235: 4 residues within 4Å: Chain 1: G.1352, A.1830, U.1831, G.1833 No protein-ligand interaction detected (PLIP) MG.236: 3 residues within 4Å: Chain 1: C.45, G.221, G.222 No protein-ligand interaction detected (PLIP) MG.237: 2 residues within 4Å: Chain 1: G.1672, A.1676 No protein-ligand interaction detected (PLIP) MG.238: 3 residues within 4Å: Chain 1: U.649, U.650, G.893 No protein-ligand interaction detected (PLIP) MG.239: 1 residues within 4Å: Chain 1: U.2775 No protein-ligand interaction detected (PLIP) MG.240: 4 residues within 4Å: Chain 1: G.1348, U.1401, A.1800, U.1831 No protein-ligand interaction detected (PLIP) MG.241: 4 residues within 4Å: Chain 1: U.911, C.2609, G.2610, G.2611 No protein-ligand interaction detected (PLIP) MG.242: 3 residues within 4Å: Chain 1: A.2724, G.2725, G.2726 No protein-ligand interaction detected (PLIP) MG.243: 2 residues within 4Å: Chain 1: G.1939, A.1940 No protein-ligand interaction detected (PLIP) MG.244: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.245: 3 residues within 4Å: Chain 1: U.119, G.123 Chain Y: R.19 No protein-ligand interaction detected (PLIP) MG.246: 1 residues within 4Å: Chain 1: A.2084 No protein-ligand interaction detected (PLIP) MG.247: 6 residues within 4Å: Chain 1: G.131, A.132, A.133, U.134, U.136, C.137 No protein-ligand interaction detected (PLIP) MG.248: 1 residues within 4Å: Chain 1: A.2887 No protein-ligand interaction detected (PLIP) MG.250: 1 residues within 4Å: Chain 2: G.101 No protein-ligand interaction detected (PLIP) MG.251: 3 residues within 4Å: Chain 2: G.72, G.103, U.104 No protein-ligand interaction detected (PLIP) MG.252: 2 residues within 4Å: Chain 2: G.76, A.100 No protein-ligand interaction detected (PLIP)

4 x ZN: ZINC ION(Non-covalent)

ZN.4: 5 residues within 4Å: Chain T: C.5, I.7, C.8, C.50, C.53 5 PLIP interactions: 5 interactions with chain T Metal complexes: T:C.5, T:I.7, T:C.8, T:C.50, T:C.53 ZN.5: 4 residues within 4Å: Chain W: C.30, C.35, C.45, C.48 4 PLIP interactions: 4 interactions with chain W Metal complexes: W:C.30, W:C.35, W:C.45, W:C.48 ZN.6: 4 residues within 4Å: Chain X: C.16, C.19, C.43, C.46 4 PLIP interactions: 4 interactions with chain X Metal complexes: X:C.16, X:C.19, X:C.43, X:C.46 ZN.7: 5 residues within 4Å: Chain 0: C.16, C.18, V.37, C.38, C.41 4 PLIP interactions: 4 interactions with chain 0 Metal complexes: 0:C.16, 0:C.18, 0:C.38, 0:C.41

1 x CLY: CLINDAMYCIN(Non-functional Binders)

CLY.249: 10 residues within 4Å: Chain 1: A.2241, A.2242, G.2244, A.2633, C.2634, A.2685, U.2686, G.2687, U.2688, C.2793 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lomakin, I.B. et al., Mechanistic Basis for the Translation Inhibition of Cutibacterium acnes by Clindamycin. J Invest Dermatol. (2024)

Release Date

2024-08-21

Peptides

50S ribosomal protein L2: A
50S ribosomal protein L3: B
50S ribosomal protein L4: C
50S ribosomal protein L5: D
50S ribosomal protein L6: E
50S ribosomal protein L13: F
50S ribosomal protein L14: G
50S ribosomal protein L15: H
50S ribosomal protein L16: I
Large ribosomal subunit protein bL17: J
50S ribosomal protein L18: K
50S ribosomal protein L19: L
50S ribosomal protein L20: M
Large ribosomal subunit protein bL21: N
50S ribosomal protein L22: O
50S ribosomal protein L23: P
Large ribosomal subunit protein uL24: Q
50S ribosomal protein L25: R
50S ribosomal protein L27: S
50S ribosomal protein L28: T
50S ribosomal protein L29: U
50S ribosomal protein L30: V
50S ribosomal protein L32: W
50S ribosomal protein L33: X
50S ribosomal protein L34: Y
Large ribosomal subunit protein bL35: Z
50S ribosomal protein L31: 0
50S ribosomal protein bL37: 3
50S ribosomal protein L36: 4

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
c

B
d

C
e

D
f

E
g

F
i

G
j

H
k

I
l

J
m

K
n

L
o

M
p

N
q

O
r

P
s

Q
t

R
u

S
v

T
w

U
x

V
y

W
z

X
0

Y
1

Z
2

0
4

3
V

4
3

50S ribosomal protein L2

50S ribosomal protein L3

50S ribosomal protein L4

50S ribosomal protein L5

50S ribosomal protein L6

50S ribosomal protein L13

50S ribosomal protein L14

50S ribosomal protein L15

50S ribosomal protein L16

Large ribosomal subunit protein bL17

50S ribosomal protein L18

50S ribosomal protein L19

50S ribosomal protein L20

Large ribosomal subunit protein bL21

50S ribosomal protein L22

50S ribosomal protein L23

Large ribosomal subunit protein uL24

50S ribosomal protein L25

50S ribosomal protein L27

50S ribosomal protein L28

50S ribosomal protein L29

50S ribosomal protein L30

50S ribosomal protein L32

50S ribosomal protein L33

50S ribosomal protein L34

Large ribosomal subunit protein bL35

50S ribosomal protein L31

50S ribosomal protein bL37

50S ribosomal protein L36

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