SMTL ID : 9c4s.1

Menin mutant G331R in complex with MLL peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

hetero-1-1-mer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: Y.118, F.119, R.122, K.136 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.119 Salt bridges: A:R.122 SO4.2: 7 residues within 4Å: Chain A: R.317, N.318, V.319, R.320, G.374, S.375, A.376 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.319, A:R.320, A:A.376 Salt bridges: A:R.320 SO4.3: 5 residues within 4Å: Chain A: R.93, G.96, G.154, L.155, R.156 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.154, A:R.156 Water bridges: A:R.93 Salt bridges: A:R.93, A:R.156

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.4: 4 residues within 4Å: Chain A: R.57, L.60, T.61, Y.62 No protein-ligand interaction detected (PLIP)

1 x PG0: 2-(2-METHOXYETHOXY)ETHANOL(Non-functional Binders)

PG0.5: 7 residues within 4Å: Chain A: W.111, L.114, S.115, R.116, Y.118, K.120, W.183 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.120

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 4 residues within 4Å: Chain A: R.311, R.315 Chain B: G.12, T.13 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:R.311, A:R.315, B:T.13 Water bridges: A:R.311, B:G.12

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Clegg, B.D. et al., Menin mutant G331R in complex with MLL peptide. To Be Published

Release Date

2025-05-21

Peptides

Menin: A
MLL cleavage product N320: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Menin

MLL cleavage product N320

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