SMTL ID : 9c58.1

AP-3 bound to myristoylated Arf1 (Q71L)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain E: T.30, T.47 Ligands: GTP.2 2 PLIP interactions: 2 interactions with chain E Metal complexes: E:T.30, E:T.47

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.2: 21 residues within 4Å: Chain E: L.24, D.25, A.26, A.27, G.28, K.29, T.30, T.31, T.44, P.46, T.47, G.68, G.69, N.125, K.126, D.128, L.129, C.158, A.159, T.160 Ligands: MG.1 19 PLIP interactions: 19 interactions with chain E Hydrogen bonds: E:A.26, E:A.27, E:G.28, E:K.29, E:T.30, E:T.30, E:T.31, E:T.31, E:T.44, E:T.47, E:G.69, E:N.125, E:K.126, E:K.126, E:A.159, E:T.160 Salt bridges: E:K.29, E:K.29, E:D.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Begley, M. et al., A structure-based mechanism for initiation of AP-3 coated vesicle formation. To Be Published

Release Date

2024-12-18

Peptides

AP-3 complex subunit delta-1: A
AP-3 complex subunit beta-1: B
AP-3 complex subunit mu-1: C
AP-3 complex subunit sigma-1: D
ADP-ribosylation factor 1: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
B

C
M

D
S

E
A

AP-3 complex subunit delta-1

AP-3 complex subunit beta-1

AP-3 complex subunit mu-1

AP-3 complex subunit sigma-1

ADP-ribosylation factor 1

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