SMTL ID : 9c5n.1

Trypanosoma cruzi R19T/K20S/C64Y mutant beta-3-HBDH APO structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

homo-tetramer

Ligands

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: R.139, Q.140, G.142 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.139 EDO.2: 5 residues within 4Å: Chain A: Q.48, S.49, P.50, D.52, S.53 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.52, A:S.53, A:S.53 Water bridges: A:D.52 EDO.3: 2 residues within 4Å: Chain B: D.217, E.219 2 PLIP interactions: 2 interactions with chain B Water bridges: B:M.218, B:A.220 EDO.4: 8 residues within 4Å: Chain B: C.227, E.228, K.229, Q.230, P.231, K.233, Q.270 Chain D: M.159 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.228, B:K.233, B:Q.270 EDO.5: 3 residues within 4Å: Chain B: G.63, T.64, R.65 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.64 Water bridges: B:R.67 EDO.6: 9 residues within 4Å: Chain C: G.21, S.24, G.25, I.26, G.27, L.28, N.99, T.199, L.201 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:G.21, C:I.26, C:G.27, C:N.99 EDO.7: 6 residues within 4Å: Chain D: Q.103, V.105, K.161, Y.196, V.202, F.225 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:Q.103, D:K.161 Water bridges: D:Y.196, D:Q.205

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hashimoto, H. et al., Trypanosoma cruzi D-3-hydroxybutyrate dehydrogenase (HBDH) is NADP-dependent enzyme. To Be Published

Release Date

2025-08-27

Peptides

Hydroxybutyrate dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Hydroxybutyrate dehydrogenase

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