SMTL ID : 9c5y.1

Structure of the amino-terminal domain of kainate receptor GluK2 in the apo state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: F.167, G.273, N.275 No protein-ligand interaction detected (PLIP) NAG.2: 1 residues within 4Å: Chain A: N.412 No protein-ligand interaction detected (PLIP) NAG.3: 8 residues within 4Å: Chain B: F.167, T.249, E.250, Y.252, H.253, G.273, V.274, N.275 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.250, B:H.253 NAG.4: 1 residues within 4Å: Chain B: N.412 No protein-ligand interaction detected (PLIP) NAG.5: 2 residues within 4Å: Chain C: N.412, T.414 No protein-ligand interaction detected (PLIP) NAG.6: 3 residues within 4Å: Chain D: H.253, G.273, N.275 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:H.253 NAG.7: 1 residues within 4Å: Chain D: N.412 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Changping, Z. et al., Structural dynamics of GluK2 kainate receptors in apo and partial agonist bound states. To Be Published

Release Date

2025-07-02

Peptides

Glutamate receptor ionotropic, kainate 2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Glutamate receptor ionotropic, kainate 2

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