SMTL ID : 9c67.1

cryoEM structure of CRISPR associated effector, CARF-Adenosine deaminase 1, Cad1, in apo form

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

6 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: H.243, H.245, D.533 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.243, A:D.533 MG.2: 3 residues within 4Å: Chain B: H.243, H.245, D.533 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.243, B:H.245, B:D.533 MG.3: 3 residues within 4Å: Chain C: H.243, H.245, D.533 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:H.243, C:D.533 MG.4: 3 residues within 4Å: Chain D: H.243, H.245, D.533 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:H.243, D:H.245, D:D.533 MG.5: 3 residues within 4Å: Chain E: H.243, H.245, D.533 2 PLIP interactions: 2 interactions with chain E Metal complexes: E:H.243, E:D.533 MG.6: 4 residues within 4Å: Chain F: H.243, H.245, R.333, D.533 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:H.243, F:H.245, F:D.533

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baca, C.F. et al., The CRISPR-associated adenosine deaminase Cad1 converts ATP to ITP to provide antiviral immunity. Cell (2024)

Release Date

2024-10-30

Peptides

Adenosine deaminase domain-containing protein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Adenosine deaminase domain-containing protein

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