SMTL ID : 9c6v.1

Crystal Structure of a single chain trimer composed of HLA-B*39:06 Y84C variant, beta-2microglobulin, and NRVMLPKAA peptide from NLRP2 (1 molecule/asymmetric unit)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL

EDO.1: 2 residues within 4Å: Chain A: K.412, T.415 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.412, A:K.412

1 x GOL: GLYCEROL

GOL.2: 3 residues within 4Å: Chain A: E.310, W.311, R.314 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.310

1 x CL: CHLORIDE ION

CL.3: 2 residues within 4Å: Chain A: S.82, K.83 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sharma, R. et al., Structural and biochemical analysis of highly similar HLA-B allotypes differentially associated with type 1 diabetes. J.Biol.Chem. (2024)

Release Date

2024-09-04

Peptides

NACHT, LRR and PYD domains-containing protein 2,Beta-2-microglobulin,MHC class I antigen: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NACHT, LRR and PYD domains-containing protein 2,Beta-2-microglobulin,MHC class I antigen

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