SMTL ID : 9c7b.1

Crystal structure of R150H neurodevelopmental disease-associated U2AF2 variant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x U- U- DU- U- U- BRU- C- C: DNA/RNA (5'-R(P*UP*U)-D(P*U)-R(P*UP*U)-D(P*(BRU))-R(P*CP*C)-3')

U-U-DU-U-U-BRU-C-C.1: 42 residues within 4Å: Chain A: Q.6, H.13, Y.15, N.18, Q.53, N.55, K.58, N.59, F.60, F.62, K.88, R.90, R.91, P.92, H.93, D.94, T.115, V.116, V.117, D.119, K.123, F.125, G.127, G.128, N.152, V.154, K.155, S.157, K.163, G.164, Y.165, F.167, K.191, K.192, L.194, Q.196, R.197, A.198, V.200, G.201, A.202, K.203 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.91, A:H.93 Water bridges: A:R.90, A:H.93, A:H.93 pi-Stacking: A:Y.15, A:H.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maji, D. et al., Recurrent Neurodevelopmentally Associated Variants of the Pre-mRNA Splicing Factor U2AF2 Alter RNA Binding Affinities and Interactions. Biochemistry (2024)

Release Date

2024-10-02

Peptides

Splicing factor U2AF 65 kDa subunit: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Splicing factor U2AF 65 kDa subunit