SMTL ID : 9c7s.1

Cryo EM structure of SARS-COV-2 (BQ 1.1) RBD in complex with Fab COV2-3891 (local refine)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.1: 2 residues within 4Å: Chain A: N.10, Q.259 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.10, A:N.10 NAG.2: 1 residues within 4Å: Chain A: N.22 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Binshtein, E. et al., Cryo EM structure of SARS-COV-2 (BQ 1.1) RBD in complex with Fab COV2-3891 (local refine). To Be Published

Release Date

2025-10-08

Peptides

Spike protein S2': A
Fab COV-3891 heavy chain: B
Fab COV-3891 light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
H

C
L

Spike protein S2'

Fab COV-3891 heavy chain

Fab COV-3891 light chain