SMTL ID : 9c8m.1

High-resolution structure of cytochrome c peroxidase from yeast under cryogenic conditions and ambient pressure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 23 residues within 4Å: Chain A: P.46, V.47, R.50, W.53, P.147, D.148, A.149, F.160, L.173, M.174, A.176, H.177, L.179, G.180, K.181, T.182, H.183, N.186, S.187, W.193, L.234, T.236, F.268 29 PLIP interactions: 28 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:R.50, A:W.53, A:W.53, A:W.53, A:P.147, A:A.149, A:F.160, A:L.173, A:A.176, A:L.179, A:T.182, A:W.193, A:L.234, A:F.268 Hydrogen bonds: A:K.181, A:H.183, A:N.186, A:S.187 Water bridges: A:D.39, A:D.39, A:D.39, A:R.50, A:R.50 Salt bridges: A:R.50, A:H.183, A:H.183 pi-Stacking: A:W.53 Metal complexes: A:H.177, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zawistowski, R.K. et al., Differential Responses in the Core, Active Site and Peripheral Regions of Cytochrome c Peroxidase to Extreme Pressure and Temperature. J.Mol.Biol. (2024)

Release Date

2024-10-16

Peptides

Cytochrome c peroxidase, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome c peroxidase, mitochondrial

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