SMTL ID : 9cah.1

Human TOP3B-TDRD3 complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 3 residues within 4Å: Chain A: E.10, D.118, Y.337 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.10, A:D.118

3 x ZN: ZINC ION(Non-covalent)

ZN.2: 3 residues within 4Å: Chain A: C.707, C.710, C.715 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.707, A:C.710, A:C.715 ZN.3: 4 residues within 4Å: Chain A: C.625, C.628, C.644, C.647 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.625, A:C.628, A:C.644, A:C.647 ZN.4: 4 residues within 4Å: Chain A: C.667, D.670, C.689, C.692 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:C.667, A:D.670, A:D.670, A:C.689, A:C.692

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, X. et al., Structural insights into human topoisomerase 3 beta DNA and RNA catalysis and nucleic acid gate dynamics. Nat Commun (2025)

Release Date

2025-02-05

Peptides

DNA topoisomerase 3-beta-1: A
Tudor domain-containing protein 3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DNA topoisomerase 3-beta-1

Tudor domain-containing protein 3