SMTL ID : 9car.1

human kidney Dipeptidyl peptidase 4

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 6 residues within 4Å: Chain A: I.194, Q.227, N.229, T.231, E.232, K.267 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.6: 6 residues within 4Å: Chain B: I.194, Q.227, N.229, T.231, E.232, K.267 No protein-ligand interaction detected (PLIP)

8 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 4 residues within 4Å: Chain A: W.187, V.279, T.280, N.281 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:W.187 NAG-NAG.3: 4 residues within 4Å: Chain A: N.219, T.221, Q.308, E.332 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.332, A:E.332 NAG-NAG.4: 6 residues within 4Å: Chain A: I.319, N.321, S.349, T.350, E.677, D.678 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:D.678 Hydrogen bonds: A:D.678 NAG-NAG.5: 5 residues within 4Å: Chain A: V.78, N.80, Y.83, N.85, S.87 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 4 residues within 4Å: Chain B: W.187, V.279, T.280, N.281 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:W.187 NAG-NAG.8: 4 residues within 4Å: Chain B: N.219, T.221, Q.308, E.332 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.332, B:E.332 NAG-NAG.9: 7 residues within 4Å: Chain B: I.319, N.321, S.349, T.350, R.596, E.677, D.678 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:D.678 NAG-NAG.10: 5 residues within 4Å: Chain B: V.78, N.80, Y.83, N.85, S.87 No protein-ligand interaction detected (PLIP)

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.11: 4 residues within 4Å: Chain A: R.147, I.148, P.149, N.150 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:R.147 Hydrogen bonds: A:N.150 NAG.12: 5 residues within 4Å: Chain A: E.73, N.74, N.75, E.91, N.92 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.74, A:N.75, A:N.92 NAG.13: 4 residues within 4Å: Chain B: R.147, I.148, P.149, N.150 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.150 NAG.14: 5 residues within 4Å: Chain B: E.73, N.74, N.75, E.91, N.92 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.74, B:N.75, B:N.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lyu, M. et al., human kidney Dipeptidyl peptidase 4. To Be Published

Release Date

2025-08-06

Peptides

Dipeptidyl peptidase 4 membrane form: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Dipeptidyl peptidase 4 membrane form

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