SMTL ID : 9cbo.3 (5 other biounits)

Methionine synthase from Thermus thermophilus HB8, Folate and Cobalamin Domains, Pre-Catalytic Conformation (Pre-Fol-on)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.34 Å

Oligo State

monomer

Ligands

1 x COB: CO-METHYLCOBALAMIN(Non-covalent)

COB.1: 34 residues within 4Å: Chain A: L.340, M.343, K.344, G.347, F.350, G.351, L.357, V.360, A.364, K.368, L.390, G.395, A.396, V.397, H.398, D.399, I.400, G.401, V.405, G.441, M.442, S.443, L.445, L.446, K.448, I.470, G.472, G.473, A.474, A.494, E.495, D.496, A.497, G.500 23 PLIP interactions: 23 interactions with chain A, Hydrophobic interactions: A:L.340, A:F.350, A:F.350, A:L.357, A:V.360, A:A.364, A:L.390, A:V.397, A:V.405, A:L.446, A:A.494 Hydrogen bonds: A:K.368, A:G.395, A:V.397, A:H.398, A:D.399, A:D.399, A:D.399, A:I.400, A:G.401, A:K.448, A:A.497 Water bridges: A:N.336

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: V.432, E.433, K.436, Y.465 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.436 Water bridges: A:K.436 GOL.3: 3 residues within 4Å: Chain A: Y.281, E.283, K.286 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.283

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mendoza, J. et al., Methionine synthase from Thermus thermophilus HB8, Folate and Cobalamin Domains, Pre-Catalytic Conformation (Pre-Fol-on). To Be Published

Release Date

2025-06-25

Peptides

Methionine synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Methionine synthase

Related Entries With Identical Sequence