SMTL ID : 9cd1.1

Crystal structure of the Klebsiella pneumoniae LpxH / JH-LPH-107 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x 01: N-(4-{4-[6-chloro-4-(trifluoromethyl)pyridin-2-yl]piperazine-1-sulfonyl}phenyl)-2-[(methanesulfonyl)(methyl)amino]benzamide

01.1: 18 residues within 4Å: Chain A: A.45, W.46, N.79, R.80, F.82, L.83, Y.125, F.128, V.132, I.137, Q.138, F.141, I.152, A.153, M.156, R.157, S.160, H.195 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:Y.125, A:F.128, A:F.128, A:F.128, A:I.137, A:F.141, A:R.157 Hydrogen bonds: A:W.46, A:N.79, A:R.80, A:R.157, A:S.160, A:S.160 Water bridges: A:R.80 pi-Stacking: A:Y.125, A:F.141 pi-Cation interactions: A:R.80

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 5 residues within 4Å: Chain A: D.8, H.10, D.41, H.197 Ligands: MN.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.8, A:H.10, A:D.41, A:H.197, H2O.1 MN.3: 6 residues within 4Å: Chain A: D.8, D.41, N.79, H.114, H.195 Ligands: MN.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.41, A:H.114, A:H.195, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ennis, A.F. et al., Design and Evaluation of Pyridinyl Sulfonyl Piperazine LpxH Inhibitors with Potent Antibiotic Activity Against Enterobacterales. Jacs Au (2024)

Release Date

2025-02-12

Peptides

UDP-2,3-diacylglucosamine hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-2,3-diacylglucosamine hydrolase

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