SMTL ID : 9cd7.3 (2 other biounits)

FGFR3 Kinase Domain with Inhibitor TYRA-300

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.53 Å

Oligo State

monomer

Ligands

1 x 01: (3P)-5-[(1R)-1-(3,5-dichloropyridin-4-yl)ethoxy]-3-{6-[6-(methanesulfonyl)-2,6-diazaspiro[3.3]heptan-2-yl]pyridin-3-yl}-1H-indazole

01.1: 16 residues within 4Å: Chain A: L.31, G.32, E.33, V.39, A.59, V.108, E.109, Y.110, A.111, A.112, K.113, G.114, N.115, R.174, L.177, D.188 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.31, A:L.31, A:V.39, A:V.108, A:Y.110, A:L.177 Hydrogen bonds: A:A.111, A:N.115 Halogen bonds: A:L.31, A:D.188

6 x GOL: GLYCEROL

GOL.2: 4 residues within 4Å: Chain A: D.15, K.17, E.80, K.83 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.17, A:K.17, A:E.80, A:K.83 GOL.3: 7 residues within 4Å: Chain A: K.17, W.18, E.19, I.47, L.95 Ligands: GOL.5, SO4.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.17, A:W.18 GOL.4: 3 residues within 4Å: Chain A: A.162, K.165, H.226 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.162 GOL.5: 3 residues within 4Å: Chain A: K.17, W.18 Ligands: GOL.3 No protein-ligand interaction detected (PLIP) GOL.6: 6 residues within 4Å: Chain A: G.263, R.265, R.281, W.284, H.285, A.286 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.263, A:R.281, A:R.281, A:H.285, A:A.286 GOL.7: 5 residues within 4Å: Chain A: R.22, L.25, T.26, L.27, Y.105 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.22, A:L.27, A:Y.105

2 x SO4: SULFATE ION

SO4.8: 6 residues within 4Å: Chain A: E.19, L.20, S.21, R.24 Ligands: GOL.3, SO4.9 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.21 Salt bridges: A:R.24 SO4.9: 2 residues within 4Å: Chain A: R.24 Ligands: SO4.8 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hudkins, R.L. et al., Discovery of TYRA-300: First Oral Selective FGFR3 Inhibitor for the Treatment of Urothelial Cancers and Achondroplasia. J.Med.Chem. (2024)

Release Date

2024-09-25

Peptides

Fibroblast growth factor receptor 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Fibroblast growth factor receptor 3

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