SMTL ID : 9cdj.1

MORC2 ATPase with DNA

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: C.499, L.501, C.502, V.524, C.525, C.536 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.499, A:C.502, A:C.525, A:C.536 ZN.4: 4 residues within 4Å: Chain B: C.499, C.502, C.525, C.536 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.499, B:C.502, B:C.525, B:C.536

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.2: 25 residues within 4Å: Chain A: E.35, N.39, A.40, A.43, D.68, G.72, M.73, D.77, V.81, K.86, S.87, K.89, I.97, G.98, Q.99, Y.100, G.101, N.102, G.103, L.104, K.105, T.197, V.199, K.427 Ligands: MG.3 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:N.39, A:D.68, A:S.87, A:S.87, A:S.87, A:K.89, A:Q.99, A:Y.100, A:G.101, A:N.102, A:N.102, A:G.103, A:L.104, A:K.105, A:T.197, A:K.427 Salt bridges: A:K.89, A:K.105 pi-Cation interactions: A:K.89 ANP.5: 27 residues within 4Å: Chain B: E.35, N.39, A.40, A.43, D.68, A.71, G.72, M.73, D.77, V.81, K.86, S.87, K.89, I.97, G.98, Q.99, Y.100, G.101, N.102, G.103, L.104, K.105, L.117, T.197, V.199, K.427 Ligands: MG.6 19 PLIP interactions: 19 interactions with chain B Hydrogen bonds: B:N.39, B:D.68, B:S.87, B:S.87, B:S.87, B:K.89, B:Q.99, B:Y.100, B:G.101, B:N.102, B:N.102, B:G.103, B:L.104, B:K.105, B:T.197, B:K.427 Salt bridges: B:K.89, B:K.105 pi-Cation interactions: B:K.89

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 7 residues within 4Å: Chain A: E.35, N.39, K.89, G.98, G.103, L.104 Ligands: ANP.2 No protein-ligand interaction detected (PLIP) MG.6: 9 residues within 4Å: Chain B: E.35, D.38, N.39, K.89, G.98, G.103, L.104, K.427 Ligands: ANP.5 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, W. et al., MORC2 is a phosphorylation-dependent DNA compaction machine. Nat Commun (2025)

Release Date

2025-07-09

Peptides

ATPase MORC2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ATPase MORC2

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