SMTL ID : 9cdu.1 (1 other biounit)

Crystal Structure of Rhombotarget A-peptide Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.61 Å

Oligo State

hetero-1-1-mer

Ligands

3 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.1: 4 residues within 4Å: Chain A: I.342, L.343, A.395, L.398 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.341 PG4.2: 6 residues within 4Å: Chain A: L.143, N.167, Q.168, A.201, Q.202, Y.207 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.167, A:Q.168, A:Y.207, A:Y.207 PG4.3: 7 residues within 4Å: Chain A: S.140, V.142, L.143, A.166, N.167, A.201, S.226 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rettie, S.A. et al., Accurate de novo design of high-affinity protein-binding macrocycles using deep learning. Nat.Chem.Biol. (2025)

Release Date

2025-07-02

Peptides

Rhombotarget A: A
RBB_D10 peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Rhombotarget A

RBB_D10 peptide

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