SMTL ID : 9cgl.1

Pikromycin Thioesterase Doubly Protected DAP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

homo-dimer

Ligands

2 x 01: 2-{[(1R)-1-(6-nitro-2H-1,3-benzodioxol-5-yl)ethyl]sulfanyl}ethyl formate

01.1: 10 residues within 4Å: Chain A: Y.17, T.69, A.140, G.141, L.144, D.168, P.169, Y.170, I.178, H.260 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.17, A:L.144 Hydrogen bonds: A:Y.170 Salt bridges: A:H.260 01.2: 11 residues within 4Å: Chain B: Y.17, T.69, A.140, G.141, L.144, D.168, P.169, Y.170, I.178, L.185, H.260 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:Y.17, B:I.178, B:L.185 Hydrogen bonds: B:Y.170 Salt bridges: B:H.260

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McCullough, T.M. et al., Substrate Trapping in Polyketide Synthase Thioesterase Domains: Structural Basis for Macrolactone Formation. Acs Catalysis (2024)

Release Date

2024-09-18

Peptides

Narbonolide/10-deoxymethynolide synthase PikA4, module 6: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Narbonolide/10-deoxymethynolide synthase PikA4, module 6