SMTL ID : 9cho.1

Autoinhibited full-length LRRK2(I2020T) on microtubules with MLi-2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 16 residues within 4Å: Chain A: T.801, G.802, S.803, G.804, K.805, T.806, T.807, Q.823, A.825, T.826, G.855, T.910, H.911, V.914, N.947, T.949 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:T.801, A:S.803, A:K.805, A:T.806, A:T.806, A:T.826, A:T.826, A:H.911 Salt bridges: A:K.805, A:K.805

1 x A1N: (2~{R},6~{S})-2,6-dimethyl-4-[6-[5-(1-methylcyclopropyl)oxy-1~{H}-indazol-3-yl]pyrimidin-4-yl]morpholine(Non-covalent)

A1N.2: 22 residues within 4Å: Chain A: L.1343, G.1344, D.1345, G.1346, V.1351, R.1353, E.1360, A.1362, I.1391, M.1405, E.1406, L.1407, A.1408, S.1409, K.1410, G.1411, S.1412, R.1415, H.1456, N.1457, L.1459, A.1474 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.1343, A:L.1407, A:A.1408, A:R.1415, A:L.1459, A:L.1459 Hydrogen bonds: A:E.1406, A:A.1408

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, S. et al., Cryo-electron tomography reveals the microtubule-bound form of inactive LRRK2. Biorxiv (2024)

Release Date

2024-12-25

Peptides

Leucine-rich repeat serine/threonine-protein kinase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Leucine-rich repeat serine/threonine-protein kinase 2