SMTL ID : 9cj1.1

Dual phosphorylated human p38 alpha bound to nilotinib

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: K.139, A.300 Ligands: EDO.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.139 Water bridges: A:K.139 EDO.3: 2 residues within 4Å: Chain A: E.286, K.287 No protein-ligand interaction detected (PLIP) EDO.4: 4 residues within 4Å: Chain A: K.139, P.314, E.317 Ligands: EDO.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.139, A:P.314 EDO.5: 4 residues within 4Å: Chain A: R.94, S.95, L.96, Y.342 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.96 Water bridges: A:R.94, A:Y.342 EDO.6: 1 residues within 4Å: Chain A: S.347 No protein-ligand interaction detected (PLIP) EDO.7: 5 residues within 4Å: Chain A: D.294, K.295, R.296, T.298, Q.301 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.296, A:Q.301

1 x NIL: Nilotinib(Non-covalent)

NIL.2: 19 residues within 4Å: Chain A: V.38, A.51, K.53, R.67, R.70, E.71, L.74, L.75, V.83, I.84, L.104, T.106, L.108, M.109, H.148, I.166, L.167, D.168, F.169 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:E.71, A:L.74, A:L.75, A:L.104, A:T.106, A:L.108, A:L.167, A:D.168 Hydrogen bonds: A:E.71, A:T.106, A:M.109, A:D.168 pi-Stacking: A:F.169

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stadnicki, E.J. et al., Dual-Action Kinase Inhibitors Influence p38 alpha MAP Kinase Dephosphorylation. Biorxiv (2024)

Release Date

2024-11-13

Peptides

Mitogen-activated protein kinase 14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 14

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