SMTL ID : 9cjk.1

Human TMED9 octamer structure

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-octamer

Ligands

1 x 9ED: [(2R)-2-[(E)-octadec-9-enoyl]oxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] (E)-octadec-9-enoate

9ED.1: 14 residues within 4Å: Chain A: L.209, L.212, V.215, A.216 Chain D: I.213, I.217 Chain E: V.215, V.219 Chain H: Q.201, T.211, L.212, V.215, A.216, I.217 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain H Hydrophobic interactions: A:L.209, A:L.212, H:Q.201, H:T.211, H:L.212, H:V.215

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xiao, L. et al., Molecular basis of TMED9 oligomerization and entrapment of misfolded protein cargo in the early secretory pathway. Sci Adv (2024)

Release Date

2024-10-02

Peptides

Transmembrane emp24 domain-containing protein 9: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
F

C
H

D
E

E
A

F
C

G
G

H
B

Membrane

We predict this structure to be a membrane protein.
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Transmembrane emp24 domain-containing protein 9

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