SMTL ID : 9cjt.1

X-ray crystal structure of SARS-CoV-2 main protease quadruple mutants in complex with Bofutrelvir

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

homo-dimer

Ligands

2 x FHR: ~{N}-[(2~{S})-3-cyclohexyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]propan-2-yl]-1~{H}-indole-2-carboxamide(Covalent)

FHR.1: 23 residues within 4Å: Chain A: H.41, C.44, M.49, Y.54, F.140, L.141, N.142, G.143, A.144, C.145, H.163, H.164, M.165, V.166, L.167, P.168, H.172, D.187, R.188, Q.189, T.190, A.191 Chain B: S.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:M.49 Hydrogen bonds: A:F.140, A:G.143, A:C.145, A:H.164, A:V.166, A:V.166 pi-Stacking: A:H.41 FHR.2: 23 residues within 4Å: Chain A: S.1 Chain B: H.41, C.44, M.49, Y.54, F.140, L.141, N.142, G.143, A.144, C.145, H.163, H.164, M.165, V.166, L.167, P.168, H.172, D.187, R.188, Q.189, T.190, A.191 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:M.49 Hydrogen bonds: B:F.140, B:G.143, B:C.145, B:H.164, B:V.166, B:V.166, B:H.172 pi-Stacking: B:H.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Esler, M.A. et al., X-ray crystal structure of SARS-CoV-2 main protease quadruple mutants in complex with Bofutrelvir. To Be Published

Release Date

2025-07-09

Peptides

3C-like proteinase nsp5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

3C-like proteinase nsp5

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