SMTL ID : 9ckj.1 (2 other biounits)

Co-crystal structure of 53BP1 tandem Tudor domains in complex with UNC9512

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

2 x 01: (3S)-1-[4-(4-methylpiperazin-1-yl)pyridine-2-carbonyl]-N-[(3M)-3-(3-oxo-2,3-dihydro-1H-isoindol-5-yl)phenyl]piperidine-3-carboxamide

01.1: 19 residues within 4Å: Chain A: Y.18, Y.20, S.21, F.37, D.38, D.39, L.65, F.71, M.102, I.105 Chain B: W.13, N.16, Y.20, F.37, D.39, Y.41, E.69, F.71 Ligands: 01.2 18 PLIP interactions: 12 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:Y.20, A:Y.20, A:D.39, A:L.65, A:F.71, A:F.71, A:I.105, A:I.105, B:E.69, B:F.71, B:F.71 Hydrogen bonds: A:Y.20, A:S.21, A:D.38, A:D.39 Salt bridges: B:D.39 pi-Cation interactions: B:W.13, B:W.13 01.2: 19 residues within 4Å: Chain A: W.13, N.16, Y.20, F.37, D.39, Y.41, E.69, F.71 Chain B: Y.18, Y.20, S.21, F.37, D.38, D.39, L.65, F.71, M.102, I.105 Ligands: 01.1 17 PLIP interactions: 12 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:Y.20, B:D.39, B:L.65, B:F.71, B:F.71, B:I.105, B:I.105, A:E.69, A:F.71 Hydrogen bonds: B:Y.18, B:S.21, B:D.38, B:D.39 pi-Stacking: B:Y.20 Salt bridges: A:D.39 pi-Cation interactions: A:W.13, A:W.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zeng, H. et al., Co-crystal structure of 53BP1 tandem Tudor domains in complex with UNC9512. To be published

Release Date

2024-10-30

Peptides

TP53-binding protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

TP53-binding protein 1

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