SMTL ID : 9ckp.1

Human G protein-coupled receptor kinase 5-D311N in complex with sangivamycin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x ACE: ACETYL GROUP(Non-functional Binders)

ACE.1: 2 residues within 4Å: Chain A: M.1, E.2 No protein-ligand interaction detected (PLIP)

1 x SGV: SANGIVAMYCIN(Non-covalent)

SGV.2: 17 residues within 4Å: Chain A: L.192, G.193, K.194, G.195, V.200, A.213, K.215, V.247, L.263, T.264, I.265, M.266, D.270, E.315, L.318, S.328, D.329 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.200, A:L.318 Hydrogen bonds: A:K.194, A:T.264, A:M.266, A:D.270, A:D.270, A:E.315, A:S.328 Water bridges: A:D.270, A:S.328, A:D.329, A:D.329

1 x K: POTASSIUM ION(Non-covalent)

K.3: 6 residues within 4Å: Chain A: H.274, I.275, M.278, N.280, G.282, F.283 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:M.278, A:N.280, A:G.282, H2O.1, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Y. et al., Structures of G protein-coupled receptor kinase 5 in multiple conformations reveals mechanism of activation and inhibition. To Be Published

Release Date

2025-07-16

Peptides

G protein-coupled receptor kinase 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

G protein-coupled receptor kinase 5

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