SMTL ID : 9cl2.1

Particulate methane monooxygenase in washed native membranes

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-mer

Ligands

57 x 01: (2R)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(hexadecanoyloxy)propyl (9Z)-heptadec-9-enoate

01.1: 17 residues within 4Å: Chain A: T.18, L.22, R.25, W.26, G.29, V.30, W.102, Y.105, W.106, Y.110 Chain E: F.26, I.97, F.101, G.105, Y.108 Ligands: 01.42, 01.43 12 PLIP interactions: 6 interactions with chain A, 6 interactions with chain E Hydrophobic interactions: A:L.22, A:R.25, A:W.102, A:W.102, E:I.97, E:F.101, E:F.101, E:F.101 Hydrogen bonds: A:R.25, E:G.105, E:Y.108 Salt bridges: A:R.25 01.2: 16 residues within 4Å: Chain A: W.67, W.71, F.148, F.151, I.152, K.155, L.170, V.173, V.174 Chain B: S.133, S.135, L.137, F.138, I.141 Ligands: 01.5, 01.7 13 PLIP interactions: 11 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:W.67, A:F.148, A:F.148, A:F.148, A:F.148, A:F.148, A:F.151, A:L.170, A:V.173, A:V.174, B:L.137, B:F.138 Salt bridges: A:K.155 01.3: 22 residues within 4Å: Chain A: W.9, F.12, A.13, I.16, Y.17, F.20, T.62, L.66, Y.69, L.70, E.85, R.88, R.89, T.92, V.95, W.96, I.142, T.146, Y.153, R.157 Ligands: 01.4, 01.6 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:W.9, A:W.9, A:F.12, A:I.16, A:Y.17, A:F.20, A:Y.69, A:W.96, A:W.96, A:W.96 Hydrogen bonds: A:E.85, A:Y.153 Water bridges: A:R.157 Salt bridges: A:R.89, A:R.157 01.4: 12 residues within 4Å: Chain A: K.8, W.9, F.12, L.58, T.62, A.63, I.65, L.66, Y.69, I.145 Ligands: 01.3, 01.6 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:K.8, A:W.9, A:W.9, A:W.9, A:F.12, A:T.62, A:I.65, A:Y.69, A:Y.69 Hydrogen bonds: A:Y.69 01.5: 20 residues within 4Å: Chain A: I.60, A.63, S.64, W.67, G.68, W.71, I.152 Chain B: V.129, L.132, S.133, F.138, V.142 Chain F: R.201, L.208, I.212 Ligands: 01.2, 01.7, 01.9, 01.15, 01.16 9 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B, 2 interactions with chain F Hydrophobic interactions: A:I.60, A:W.67, A:W.67, A:W.71, A:W.71, B:L.132, B:F.138, F:L.208, F:I.212 01.6: 18 residues within 4Å: Chain A: I.16, V.19, F.20, W.23, Y.27, Y.31, T.46, Y.47, N.50, F.51, T.54, E.55, L.58, E.59, L.138, I.142 Ligands: 01.3, 01.4 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:F.20, A:F.20, A:W.23, A:W.23, A:W.23, A:N.50, A:F.51, A:F.51, A:E.55, A:L.58, A:L.58, A:E.59, A:I.142, A:I.142 Hydrogen bonds: A:Y.31, A:T.46, A:T.46 01.7: 13 residues within 4Å: Chain B: L.132, F.138 Chain F: R.201, M.205, L.208, A.209, I.212, L.213 Ligands: 01.2, 01.5, 01.9, 01.15, 01.16 6 PLIP interactions: 5 interactions with chain F, 1 interactions with chain B Hydrophobic interactions: F:M.205, F:L.208, F:A.209, F:I.212, F:I.212, B:L.132 01.9: 24 residues within 4Å: Chain A: S.39, F.40, L.52, Y.53, I.56, I.60, D.127, F.128, Y.137, L.180, P.181, V.183, G.184 Chain B: M.145, G.204, K.205, D.206, P.209, V.210, F.213 Ligands: 01.5, 01.7, 01.15, 01.16 14 PLIP interactions: 9 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:L.52, A:Y.53, A:I.56, A:I.60, A:F.128, A:F.128, A:Y.137, A:L.180, A:V.183, B:D.206, B:P.209, B:F.213, B:F.213, B:F.213 01.10: 16 residues within 4Å: Chain B: I.222, F.224, M.225, W.226, F.228, I.229, W.232, F.233, R.237 Chain I: W.212 Ligands: 01.11, 01.12, 01.13, 01.14, 01.19, 01.33 12 PLIP interactions: 10 interactions with chain B, 2 interactions with chain I Hydrophobic interactions: B:M.225, B:F.228, B:I.229, B:I.229, B:I.229, B:W.232, B:W.232, B:W.232, I:W.212, I:W.212 Water bridges: B:R.237 Salt bridges: B:R.237 01.11: 21 residues within 4Å: Chain B: W.232, F.233, R.237, F.238, L.239, Q.240, S.241 Chain D: L.137, F.224, F.228 Chain I: L.167, L.170, V.171, V.174, G.175, M.178, F.210, L.213 Ligands: 01.10, 01.28, 01.33 18 PLIP interactions: 4 interactions with chain B, 10 interactions with chain I, 4 interactions with chain D Hydrophobic interactions: B:L.239, B:L.239, I:L.167, I:L.167, I:L.170, I:V.171, I:V.171, I:M.178, I:F.210, I:F.210, I:L.213, I:L.213, D:L.137, D:F.224, D:F.228, D:F.228 Hydrogen bonds: B:R.237, B:Q.240 01.12: 11 residues within 4Å: Chain I: W.193, F.194, P.202, Y.205 Ligands: 01.10, 01.13, 01.14, 01.26, 01.27, 01.28, 01.37 3 PLIP interactions: 3 interactions with chain I Hydrophobic interactions: I:W.193, I:P.202, I:Y.205 01.13: 22 residues within 4Å: Chain B: T.39, W.43, V.58, I.61, V.62, M.194, F.214, M.218, L.221, I.222 Chain I: F.194, L.198, V.200, A.201, P.202, Y.205, I.209, W.212 Ligands: 01.10, 01.12, 01.14, 01.37 8 PLIP interactions: 5 interactions with chain I, 3 interactions with chain B Hydrophobic interactions: I:V.200, I:Y.205, I:Y.205, I:Y.205, I:W.212, B:T.39, B:W.43, B:I.222 01.14: 34 residues within 4Å: Chain A: N.182, L.185, W.188, F.192, W.193, P.202, Y.205, G.206, I.209, F.210 Chain B: H.35, L.54, T.57, V.58, I.61, V.62, T.65, M.194, T.199, F.214, F.217, M.218, L.221, I.222, M.225, W.226 Chain C: T.48 Chain I: W.212 Ligands: 01.10, 01.12, 01.13, 01.19, 01.36, 01.37 16 PLIP interactions: 9 interactions with chain A, 7 interactions with chain B Hydrophobic interactions: A:L.185, A:W.188, A:W.188, A:W.193, A:W.193, A:W.193, A:F.210, A:F.210, B:V.58, B:I.61, B:V.62, B:F.217, B:F.217, B:L.221, B:I.222 Hydrogen bonds: A:F.192 01.15: 20 residues within 4Å: Chain A: I.56, E.59, W.67, F.128, Y.137, P.141, I.144, I.145, L.180 Chain B: K.205, P.209, F.213 Chain F: I.212, V.216, S.220, N.223 Ligands: 01.5, 01.7, 01.9, 01.16 8 PLIP interactions: 6 interactions with chain A, 2 interactions with chain F Hydrophobic interactions: A:I.56, A:Y.137, A:Y.137, A:P.141, A:P.141, A:I.144, F:I.212, F:V.216 01.16: 23 residues within 4Å: Chain B: R.52, I.125, V.142, M.145, G.146, L.149, I.150, Y.152, P.153, W.156, A.208, P.209, A.212, F.213 Chain C: Y.349 Chain F: I.212, V.216, M.219, N.223 Ligands: 01.5, 01.7, 01.9, 01.15 12 PLIP interactions: 10 interactions with chain B, 2 interactions with chain F Hydrophobic interactions: B:V.142, B:L.149, B:I.150, B:P.153, B:P.209, B:P.209, B:F.213, B:F.213 Water bridges: B:R.52 Salt bridges: B:R.52 Hydrogen bonds: F:N.223, F:N.223 01.17: 14 residues within 4Å: Chain B: R.14, W.18, L.21, F.25, L.89, L.93 Chain F: F.164, V.168, I.171, G.172, S.175, R.176 Ligands: 01.18, 01.59 9 PLIP interactions: 1 interactions with chain F, 8 interactions with chain B Hydrophobic interactions: F:F.164, B:W.18, B:W.18, B:F.25, B:F.25, B:F.25, B:L.93 Hydrogen bonds: B:R.14 Salt bridges: B:R.14 01.18: 15 residues within 4Å: Chain B: Q.11, T.15, W.18, M.19, L.21, F.22, F.25, F.26 Chain I: L.5, K.7, L.10, L.14, W.102 Ligands: 01.17, 01.59 16 PLIP interactions: 7 interactions with chain I, 9 interactions with chain B Hydrophobic interactions: I:L.10, I:L.14, I:L.14, I:W.102, B:W.18, B:W.18, B:W.18, B:L.21, B:F.22, B:F.22, B:F.22, B:F.22, B:F.25 Hydrogen bonds: I:K.7, I:K.7 Salt bridges: I:K.7 01.19: 12 residues within 4Å: Chain B: L.221, F.224, M.225, F.228, R.231, W.232 Ligands: 01.10, 01.14, 01.33, 01.35, 01.36, 01.44 7 PLIP interactions: 1 interactions with chain E, 6 interactions with chain B Water bridges: E:R.237 Hydrophobic interactions: B:F.224, B:F.224, B:M.225, B:F.228, B:F.228 Salt bridges: B:R.231 01.20: 12 residues within 4Å: Chain C: F.162, A.165, I.166, A.169, Y.173, T.199, K.202, V.203, G.206, F.207, A.210, I.214 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:A.165, C:K.202 Hydrogen bonds: C:T.199 Salt bridges: C:K.202 01.23: 24 residues within 4Å: Chain D: M.145, G.204, K.205, D.206, P.209, V.210, F.213 Chain I: S.39, F.40, L.52, Y.53, I.56, I.60, D.127, F.128, Y.137, L.180, P.181, V.183, G.184 Ligands: 01.29, 01.30, 01.63, 01.65 14 PLIP interactions: 5 interactions with chain D, 9 interactions with chain I Hydrophobic interactions: D:D.206, D:P.209, D:F.213, D:F.213, D:F.213, I:L.52, I:Y.53, I:I.56, I:I.60, I:F.128, I:F.128, I:Y.137, I:L.180, I:V.183 01.24: 16 residues within 4Å: Chain D: I.222, F.224, M.225, W.226, F.228, I.229, W.232, F.233, R.237 Chain H: W.212 Ligands: 01.25, 01.26, 01.27, 01.28, 01.33, 01.44 12 PLIP interactions: 10 interactions with chain D, 2 interactions with chain H Hydrophobic interactions: D:M.225, D:F.228, D:I.229, D:I.229, D:I.229, D:W.232, D:W.232, D:W.232, H:W.212, H:W.212 Water bridges: D:R.237 Salt bridges: D:R.237 01.25: 21 residues within 4Å: Chain D: W.232, F.233, R.237, F.238, L.239, Q.240, S.241 Chain E: L.137, F.224, F.228 Chain H: L.167, L.170, V.171, V.174, G.175, M.178, F.210, L.213 Ligands: 01.24, 01.39, 01.44 18 PLIP interactions: 4 interactions with chain D, 4 interactions with chain E, 10 interactions with chain H Hydrophobic interactions: D:L.239, D:L.239, E:L.137, E:F.224, E:F.228, E:F.228, H:L.167, H:L.167, H:L.170, H:V.171, H:V.171, H:M.178, H:F.210, H:F.210, H:L.213, H:L.213 Hydrogen bonds: D:R.237, D:Q.240 01.26: 11 residues within 4Å: Chain H: W.193, F.194, P.202, Y.205 Ligands: 01.12, 01.24, 01.27, 01.28, 01.37, 01.38, 01.39 3 PLIP interactions: 3 interactions with chain H Hydrophobic interactions: H:W.193, H:P.202, H:Y.205 01.27: 22 residues within 4Å: Chain D: T.39, W.43, V.58, I.61, V.62, M.194, F.214, M.218, L.221, I.222 Chain H: F.194, L.198, V.200, A.201, P.202, Y.205, I.209, W.212 Ligands: 01.12, 01.24, 01.26, 01.28 9 PLIP interactions: 3 interactions with chain D, 6 interactions with chain H Hydrophobic interactions: D:T.39, D:W.43, D:I.222, H:V.200, H:Y.205, H:Y.205, H:Y.205, H:I.209, H:W.212 01.28: 34 residues within 4Å: Chain D: H.35, L.54, T.57, V.58, I.61, V.62, T.65, M.194, T.199, F.214, F.217, M.218, L.221, I.222, M.225, W.226 Chain F: T.48 Chain H: W.212 Chain I: N.182, L.185, W.188, F.192, W.193, P.202, Y.205, G.206, I.209, F.210 Ligands: 01.11, 01.12, 01.24, 01.26, 01.27, 01.33 16 PLIP interactions: 7 interactions with chain D, 9 interactions with chain I Hydrophobic interactions: D:V.58, D:I.61, D:V.62, D:F.217, D:F.217, D:L.221, D:I.222, I:L.185, I:W.188, I:W.188, I:W.193, I:W.193, I:W.193, I:F.210, I:F.210 Hydrogen bonds: I:F.192 01.29: 20 residues within 4Å: Chain D: K.205, P.209, F.213 Chain G: I.212, V.216, S.220, N.223 Chain I: I.56, E.59, W.67, F.128, Y.137, P.141, I.144, I.145, L.180 Ligands: 01.23, 01.30, 01.63, 01.65 8 PLIP interactions: 6 interactions with chain I, 2 interactions with chain G Hydrophobic interactions: I:I.56, I:Y.137, I:Y.137, I:P.141, I:P.141, I:I.144, G:I.212, G:V.216 01.30: 23 residues within 4Å: Chain D: R.52, I.125, V.142, M.145, G.146, L.149, I.150, Y.152, P.153, W.156, A.208, P.209, A.212, F.213 Chain F: Y.349 Chain G: I.212, V.216, M.219, N.223 Ligands: 01.23, 01.29, 01.63, 01.65 12 PLIP interactions: 10 interactions with chain D, 2 interactions with chain G Hydrophobic interactions: D:V.142, D:L.149, D:I.150, D:P.153, D:P.209, D:P.209, D:F.213, D:F.213 Water bridges: D:R.52 Salt bridges: D:R.52 Hydrogen bonds: G:N.223, G:N.223 01.31: 14 residues within 4Å: Chain D: R.14, W.18, L.21, F.25, L.89, L.93 Chain G: F.164, V.168, I.171, G.172, S.175, R.176 Ligands: 01.32, 01.51 9 PLIP interactions: 8 interactions with chain D, 1 interactions with chain G Hydrophobic interactions: D:W.18, D:W.18, D:F.25, D:F.25, D:F.25, D:L.93, G:F.164 Hydrogen bonds: D:R.14 Salt bridges: D:R.14 01.32: 15 residues within 4Å: Chain D: Q.11, T.15, W.18, M.19, L.21, F.22, F.25, F.26 Chain H: L.5, K.7, L.10, L.14, W.102 Ligands: 01.31, 01.51 16 PLIP interactions: 9 interactions with chain D, 7 interactions with chain H Hydrophobic interactions: D:W.18, D:W.18, D:W.18, D:L.21, D:F.22, D:F.22, D:F.22, D:F.22, D:F.25, H:L.10, H:L.14, H:L.14, H:W.102 Hydrogen bonds: H:K.7, H:K.7 Salt bridges: H:K.7 01.33: 12 residues within 4Å: Chain D: L.221, F.224, M.225, F.228, R.231, W.232 Ligands: 01.10, 01.11, 01.19, 01.24, 01.28, 01.44 7 PLIP interactions: 6 interactions with chain D, 1 interactions with chain B Hydrophobic interactions: D:F.224, D:F.224, D:M.225, D:F.228, D:F.228 Salt bridges: D:R.231 Water bridges: B:R.237 01.34: 24 residues within 4Å: Chain E: M.145, G.204, K.205, D.206, P.209, V.210, F.213 Chain H: S.39, F.40, L.52, Y.53, I.56, I.60, D.127, F.128, Y.137, L.180, P.181, V.183, G.184 Ligands: 01.40, 01.41, 01.55, 01.57 14 PLIP interactions: 9 interactions with chain H, 5 interactions with chain E Hydrophobic interactions: H:L.52, H:Y.53, H:I.56, H:I.60, H:F.128, H:F.128, H:Y.137, H:L.180, H:V.183, E:D.206, E:P.209, E:F.213, E:F.213, E:F.213 01.35: 16 residues within 4Å: Chain A: W.212 Chain E: I.222, F.224, M.225, W.226, F.228, I.229, W.232, F.233, R.237 Ligands: 01.19, 01.36, 01.37, 01.38, 01.39, 01.44 12 PLIP interactions: 10 interactions with chain E, 2 interactions with chain A Hydrophobic interactions: E:M.225, E:F.228, E:I.229, E:I.229, E:I.229, E:W.232, E:W.232, E:W.232, A:W.212, A:W.212 Water bridges: E:R.237 Salt bridges: E:R.237 01.36: 21 residues within 4Å: Chain A: L.167, L.170, V.171, V.174, G.175, M.178, F.210, L.213 Chain B: L.137, F.224, F.228 Chain E: W.232, F.233, R.237, F.238, L.239, Q.240, S.241 Ligands: 01.14, 01.19, 01.35 18 PLIP interactions: 10 interactions with chain A, 4 interactions with chain B, 4 interactions with chain E Hydrophobic interactions: A:L.167, A:L.167, A:L.170, A:V.171, A:V.171, A:M.178, A:F.210, A:F.210, A:L.213, A:L.213, B:L.137, B:F.224, B:F.228, B:F.228, E:L.239, E:L.239 Hydrogen bonds: E:R.237, E:Q.240 01.37: 11 residues within 4Å: Chain A: W.193, F.194, P.202, Y.205 Ligands: 01.12, 01.13, 01.14, 01.26, 01.35, 01.38, 01.39 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.193, A:P.202, A:Y.205 01.38: 22 residues within 4Å: Chain A: F.194, L.198, V.200, A.201, P.202, Y.205, I.209, W.212 Chain E: T.39, W.43, V.58, I.61, V.62, M.194, F.214, M.218, L.221, I.222 Ligands: 01.26, 01.35, 01.37, 01.39 9 PLIP interactions: 6 interactions with chain A, 3 interactions with chain E Hydrophobic interactions: A:V.200, A:Y.205, A:Y.205, A:Y.205, A:I.209, A:W.212, E:T.39, E:W.43, E:I.222 01.39: 34 residues within 4Å: Chain A: W.212 Chain E: H.35, L.54, T.57, V.58, I.61, V.62, T.65, M.194, T.199, F.214, F.217, M.218, L.221, I.222, M.225, W.226 Chain G: T.48 Chain H: N.182, L.185, W.188, F.192, W.193, P.202, Y.205, G.206, I.209, F.210 Ligands: 01.25, 01.26, 01.35, 01.37, 01.38, 01.44 15 PLIP interactions: 7 interactions with chain E, 8 interactions with chain H Hydrophobic interactions: E:V.58, E:I.61, E:V.62, E:F.217, E:F.217, E:L.221, E:I.222, H:L.185, H:W.188, H:W.188, H:W.193, H:W.193, H:F.210, H:F.210 Hydrogen bonds: H:F.192 01.40: 21 residues within 4Å: Chain C: I.212, V.216, M.219, S.220, N.223 Chain E: K.205, P.209, F.213 Chain H: I.56, E.59, W.67, F.128, Y.137, P.141, I.144, I.145, L.180 Ligands: 01.34, 01.41, 01.55, 01.57 8 PLIP interactions: 6 interactions with chain H, 2 interactions with chain C Hydrophobic interactions: H:I.56, H:Y.137, H:Y.137, H:P.141, H:P.141, H:I.144, C:I.212, C:V.216 01.41: 23 residues within 4Å: Chain C: I.212, V.216, M.219, N.223 Chain E: R.52, I.125, V.142, M.145, G.146, L.149, I.150, Y.152, P.153, W.156, A.208, P.209, A.212, F.213 Chain G: Y.349 Ligands: 01.34, 01.40, 01.55, 01.57 12 PLIP interactions: 10 interactions with chain E, 2 interactions with chain C Hydrophobic interactions: E:V.142, E:L.149, E:I.150, E:P.153, E:P.209, E:P.209, E:F.213, E:F.213 Water bridges: E:R.52 Salt bridges: E:R.52 Hydrogen bonds: C:N.223, C:N.223 01.42: 14 residues within 4Å: Chain C: F.164, V.168, I.171, G.172, S.175, R.176 Chain E: R.14, W.18, L.21, F.25, L.89, L.93 Ligands: 01.1, 01.43 9 PLIP interactions: 1 interactions with chain C, 8 interactions with chain E Hydrophobic interactions: C:F.164, E:W.18, E:W.18, E:F.25, E:F.25, E:F.25, E:L.93 Hydrogen bonds: E:R.14 Salt bridges: E:R.14 01.43: 15 residues within 4Å: Chain A: L.5, K.7, L.10, L.14, W.102 Chain E: Q.11, T.15, W.18, M.19, L.21, F.22, F.25, F.26 Ligands: 01.1, 01.42 16 PLIP interactions: 7 interactions with chain A, 9 interactions with chain E Hydrophobic interactions: A:L.10, A:L.14, A:L.14, A:W.102, E:W.18, E:W.18, E:W.18, E:L.21, E:F.22, E:F.22, E:F.22, E:F.22, E:F.25 Hydrogen bonds: A:K.7, A:K.7 Salt bridges: A:K.7 01.44: 12 residues within 4Å: Chain E: L.221, F.224, M.225, F.228, R.231, W.232 Ligands: 01.19, 01.24, 01.25, 01.33, 01.35, 01.39 7 PLIP interactions: 6 interactions with chain E, 1 interactions with chain D Hydrophobic interactions: E:F.224, E:F.224, E:M.225, E:F.228, E:F.228 Salt bridges: E:R.231 Water bridges: D:R.237 01.45: 12 residues within 4Å: Chain F: F.162, A.165, I.166, A.169, Y.173, T.199, K.202, V.203, G.206, F.207, A.210, I.214 4 PLIP interactions: 4 interactions with chain F Hydrophobic interactions: F:A.165, F:K.202 Hydrogen bonds: F:T.199 Salt bridges: F:K.202 01.48: 12 residues within 4Å: Chain G: F.162, A.165, I.166, A.169, Y.173, T.199, K.202, V.203, G.206, F.207, A.210, I.214 4 PLIP interactions: 4 interactions with chain G Hydrophobic interactions: G:A.165, G:K.202 Hydrogen bonds: G:T.199 Salt bridges: G:K.202 01.51: 17 residues within 4Å: Chain D: F.26, I.97, F.101, G.105, Y.108 Chain H: T.18, L.22, R.25, W.26, G.29, V.30, W.102, Y.105, W.106, Y.110 Ligands: 01.31, 01.32 12 PLIP interactions: 6 interactions with chain H, 6 interactions with chain D Hydrophobic interactions: H:L.22, H:R.25, H:W.102, H:W.102, D:I.97, D:F.101, D:F.101, D:F.101 Hydrogen bonds: H:R.25, D:G.105, D:Y.108 Salt bridges: H:R.25 01.52: 16 residues within 4Å: Chain E: S.133, S.135, L.137, F.138, I.141 Chain H: W.67, W.71, F.148, F.151, I.152, K.155, L.170, V.173, V.174 Ligands: 01.55, 01.57 13 PLIP interactions: 11 interactions with chain H, 2 interactions with chain E Hydrophobic interactions: H:W.67, H:F.148, H:F.148, H:F.148, H:F.148, H:F.148, H:F.151, H:L.170, H:V.173, H:V.174, E:L.137, E:F.138 Salt bridges: H:K.155 01.53: 22 residues within 4Å: Chain H: W.9, F.12, A.13, I.16, Y.17, F.20, T.62, L.66, Y.69, L.70, E.85, R.88, R.89, T.92, V.95, W.96, I.142, T.146, Y.153, R.157 Ligands: 01.54, 01.56 15 PLIP interactions: 15 interactions with chain H Hydrophobic interactions: H:W.9, H:W.9, H:F.12, H:I.16, H:Y.17, H:F.20, H:Y.69, H:W.96, H:W.96, H:W.96 Hydrogen bonds: H:E.85, H:Y.153 Water bridges: H:R.157 Salt bridges: H:R.89, H:R.157 01.54: 12 residues within 4Å: Chain H: K.8, W.9, F.12, L.58, T.62, A.63, I.65, L.66, Y.69, I.145 Ligands: 01.53, 01.56 10 PLIP interactions: 10 interactions with chain H Hydrophobic interactions: H:K.8, H:W.9, H:W.9, H:W.9, H:F.12, H:T.62, H:I.65, H:Y.69, H:Y.69 Hydrogen bonds: H:Y.69 01.55: 20 residues within 4Å: Chain C: R.201, L.208, I.212 Chain E: V.129, L.132, S.133, F.138, V.142 Chain H: I.60, A.63, S.64, W.67, G.68, W.71, I.152 Ligands: 01.34, 01.40, 01.41, 01.52, 01.57 9 PLIP interactions: 2 interactions with chain C, 2 interactions with chain E, 5 interactions with chain H Hydrophobic interactions: C:L.208, C:I.212, E:L.132, E:F.138, H:I.60, H:W.67, H:W.67, H:W.71, H:W.71 01.56: 18 residues within 4Å: Chain H: I.16, V.19, F.20, W.23, Y.27, Y.31, T.46, Y.47, N.50, F.51, T.54, E.55, L.58, E.59, L.138, I.142 Ligands: 01.53, 01.54 17 PLIP interactions: 17 interactions with chain H Hydrophobic interactions: H:F.20, H:F.20, H:W.23, H:W.23, H:W.23, H:N.50, H:F.51, H:F.51, H:E.55, H:L.58, H:L.58, H:E.59, H:I.142, H:I.142 Hydrogen bonds: H:Y.31, H:T.46, H:T.46 01.57: 13 residues within 4Å: Chain C: R.201, M.205, L.208, A.209, I.212, L.213 Chain E: L.132, F.138 Ligands: 01.34, 01.40, 01.41, 01.52, 01.55 6 PLIP interactions: 5 interactions with chain C, 1 interactions with chain E Hydrophobic interactions: C:M.205, C:L.208, C:A.209, C:I.212, C:I.212, E:L.132 01.59: 17 residues within 4Å: Chain B: F.26, I.97, F.101, G.105, Y.108 Chain I: T.18, L.22, R.25, W.26, G.29, V.30, W.102, Y.105, W.106, Y.110 Ligands: 01.17, 01.18 12 PLIP interactions: 6 interactions with chain I, 6 interactions with chain B Hydrophobic interactions: I:L.22, I:R.25, I:W.102, I:W.102, B:I.97, B:F.101, B:F.101, B:F.101 Hydrogen bonds: I:R.25, B:G.105, B:Y.108 Salt bridges: I:R.25 01.60: 16 residues within 4Å: Chain D: S.133, S.135, L.137, F.138, I.141 Chain I: W.67, W.71, F.148, F.151, I.152, K.155, L.170, V.173, V.174 Ligands: 01.63, 01.65 13 PLIP interactions: 11 interactions with chain I, 2 interactions with chain D Hydrophobic interactions: I:W.67, I:F.148, I:F.148, I:F.148, I:F.148, I:F.148, I:F.151, I:L.170, I:V.173, I:V.174, D:L.137, D:F.138 Salt bridges: I:K.155 01.61: 22 residues within 4Å: Chain I: W.9, F.12, A.13, I.16, Y.17, F.20, T.62, L.66, Y.69, L.70, E.85, R.88, R.89, T.92, V.95, W.96, I.142, T.146, Y.153, R.157 Ligands: 01.62, 01.64 15 PLIP interactions: 15 interactions with chain I Hydrophobic interactions: I:W.9, I:W.9, I:F.12, I:I.16, I:Y.17, I:F.20, I:Y.69, I:W.96, I:W.96, I:W.96 Hydrogen bonds: I:E.85, I:Y.153 Water bridges: I:R.157 Salt bridges: I:R.89, I:R.157 01.62: 12 residues within 4Å: Chain I: K.8, W.9, F.12, L.58, T.62, A.63, I.65, L.66, Y.69, I.145 Ligands: 01.61, 01.64 10 PLIP interactions: 10 interactions with chain I Hydrophobic interactions: I:K.8, I:W.9, I:W.9, I:W.9, I:F.12, I:T.62, I:I.65, I:Y.69, I:Y.69 Hydrogen bonds: I:Y.69 01.63: 20 residues within 4Å: Chain D: V.129, L.132, S.133, F.138, V.142 Chain G: R.201, L.208, I.212 Chain I: I.60, A.63, S.64, W.67, G.68, W.71, I.152 Ligands: 01.23, 01.29, 01.30, 01.60, 01.65 9 PLIP interactions: 5 interactions with chain I, 2 interactions with chain G, 2 interactions with chain D Hydrophobic interactions: I:I.60, I:W.67, I:W.67, I:W.71, I:W.71, G:L.208, G:I.212, D:L.132, D:F.138 01.64: 18 residues within 4Å: Chain I: I.16, V.19, F.20, W.23, Y.27, Y.31, T.46, Y.47, N.50, F.51, T.54, E.55, L.58, E.59, L.138, I.142 Ligands: 01.61, 01.62 17 PLIP interactions: 17 interactions with chain I Hydrophobic interactions: I:F.20, I:F.20, I:W.23, I:W.23, I:W.23, I:N.50, I:F.51, I:F.51, I:E.55, I:L.58, I:L.58, I:E.59, I:I.142, I:I.142 Hydrogen bonds: I:Y.31, I:T.46, I:T.46 01.65: 13 residues within 4Å: Chain D: L.132, F.138 Chain G: R.201, M.205, L.208, A.209, I.212, L.213 Ligands: 01.23, 01.29, 01.30, 01.60, 01.63 6 PLIP interactions: 5 interactions with chain G, 1 interactions with chain D Hydrophobic interactions: G:M.205, G:L.208, G:A.209, G:I.212, G:I.212, D:L.132

9 x CU: COPPER (II) ION(Non-covalent)

CU.8: 4 residues within 4Å: Chain A: N.186, H.190, L.203, H.204 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.190, A:H.204, H2O.1 CU.21: 3 residues within 4Å: Chain C: H.1, H.105, H.107 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.1, C:H.105, C:H.107 CU.22: 3 residues within 4Å: Chain C: H.16, H.40, Q.372 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:H.16, C:H.40 CU.46: 3 residues within 4Å: Chain F: H.1, H.105, H.107 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:H.1, F:H.105, F:H.107 CU.47: 3 residues within 4Å: Chain F: H.16, H.40, Q.372 2 PLIP interactions: 2 interactions with chain F Metal complexes: F:H.16, F:H.40 CU.49: 3 residues within 4Å: Chain G: H.1, H.105, H.107 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:H.1, G:H.105, G:H.107 CU.50: 3 residues within 4Å: Chain G: H.16, H.40, Q.372 2 PLIP interactions: 2 interactions with chain G Metal complexes: G:H.16, G:H.40 CU.58: 4 residues within 4Å: Chain H: N.186, H.190, L.203, H.204 3 PLIP interactions: 2 interactions with chain H, 1 Ligand-Water interactions Metal complexes: H:H.190, H:H.204, H2O.21 CU.66: 4 residues within 4Å: Chain I: N.186, H.190, L.203, H.204 3 PLIP interactions: 2 interactions with chain I, 1 Ligand-Water interactions Metal complexes: I:H.190, I:H.204, H2O.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tucci, F.J. et al., Structures of methane and ammonia monooxygenases in native membranes. Proc.Natl.Acad.Sci.USA (2025)

Release Date

2025-01-08

Peptides

Particulate methane monooxygenase gamma subunit: AHI
Particulate methane monooxygenase beta subunit: BDE
Particulate methane monooxygenase alpha subunit: CFG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
Ba

H
Bb

I
Bc

B
Ca

D
Cb

E
Cc

C
Aa

F
Ab

G
Ac

Membrane

We predict this structure to be a membrane protein.
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Particulate methane monooxygenase gamma subunit

Particulate methane monooxygenase beta subunit

Particulate methane monooxygenase alpha subunit

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