SMTL ID : 9cly.1

Crystal structure of the 3-ketoacyl-(acyl-carrier-protein) reductase, CylG, from Streptococcus agalactiae 2603V/R

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.16 Å

Oligo State

homo-tetramer

Ligands

4 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 29 residues within 4Å: Chain A: G.11, T.13, R.14, G.15, I.16, Y.35, N.36, S.37, N.38, C.57, N.58, I.59, N.85, A.86, G.87, I.88, I.108, I.136, S.137, S.138, Y.151, K.155, P.181, G.182, F.183, I.184, T.186, M.188, T.189 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:P.181 Hydrogen bonds: A:G.11, A:G.11, A:T.13, A:R.14, A:I.16, A:N.36, A:N.36, A:S.37, A:S.37, A:N.38, A:N.58, A:I.59, A:N.85, A:Y.151, A:K.155, A:I.184, A:I.184, A:T.186, A:T.186 Water bridges: A:G.17, A:N.85, A:D.187, A:D.187 Salt bridges: A:R.14, A:R.14 NDP.2: 30 residues within 4Å: Chain B: G.11, T.13, R.14, G.15, I.16, G.17, Y.35, N.36, S.37, N.38, C.57, N.58, I.59, N.85, A.86, G.87, I.88, I.108, I.136, S.137, S.138, Y.151, K.155, P.181, G.182, F.183, I.184, T.186, M.188, T.189 21 PLIP interactions: 21 interactions with chain B Hydrogen bonds: B:G.11, B:T.13, B:T.13, B:R.14, B:I.16, B:G.17, B:N.36, B:S.37, B:S.37, B:N.38, B:N.58, B:I.59, B:N.85, B:G.87, B:K.155, B:I.184, B:T.186, B:T.186 Water bridges: B:N.36 Salt bridges: B:R.14, B:R.14 NDP.4: 29 residues within 4Å: Chain C: G.11, T.13, R.14, G.15, I.16, Y.35, N.36, S.37, N.38, C.57, N.58, I.59, N.85, A.86, G.87, I.88, I.108, I.136, S.137, S.138, Y.151, K.155, P.181, G.182, F.183, I.184, T.186, M.188, T.189 25 PLIP interactions: 25 interactions with chain C Hydrophobic interactions: C:P.181 Hydrogen bonds: C:G.11, C:G.11, C:T.13, C:T.13, C:R.14, C:I.16, C:N.36, C:N.36, C:S.37, C:S.37, C:N.38, C:N.58, C:I.59, C:N.85, C:K.155, C:I.184, C:I.184, C:T.186 Water bridges: C:G.17, C:N.85, C:D.187, C:D.187 Salt bridges: C:R.14, C:R.14 NDP.5: 30 residues within 4Å: Chain D: G.11, T.13, R.14, G.15, I.16, G.17, Y.35, N.36, S.37, N.38, C.57, N.58, I.59, N.85, A.86, G.87, I.88, I.108, I.136, S.137, S.138, Y.151, K.155, P.181, G.182, F.183, I.184, T.186, M.188, T.189 22 PLIP interactions: 22 interactions with chain D Hydrogen bonds: D:G.11, D:T.13, D:R.14, D:I.16, D:G.17, D:N.36, D:S.37, D:S.37, D:N.38, D:N.58, D:I.59, D:N.85, D:G.87, D:Y.151, D:K.155, D:I.184, D:T.186, D:T.186, D:T.186 Water bridges: D:N.36 Salt bridges: D:R.14, D:R.14

2 x IMD: IMIDAZOLE(Non-covalent)

IMD.3: 3 residues within 4Å: Chain B: E.197, H.201 Chain C: H.201 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:E.197 pi-Stacking: B:H.201, C:H.201 IMD.6: 3 residues within 4Å: Chain A: H.201 Chain D: E.197, H.201 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain A Hydrogen bonds: D:E.197, D:E.197 pi-Stacking: D:H.201, A:H.201

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maltseva, N. et al., Crystal structure of the 3-ketoacyl-(acyl-carrier-protein) reductase, CylG, from Streptococcus agalactiae 2603V/R. To be published

Release Date

2024-07-24

Peptides

CylG protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

CylG protein