SMTL ID : 9cmr.1

Saccharomyces cerevisiae Tom1 HECT domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: T.7, D.8, K.11, L.406, L.407, N.410 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.7, A:D.8, A:G.403, A:N.410 Salt bridges: A:K.11 SO4.2: 4 residues within 4Å: Chain A: G.27, P.28, F.29, K.51 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.29 Salt bridges: A:K.51 SO4.3: 3 residues within 4Å: Chain A: V.304, R.331, R.338 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.338

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Madrigal, J. et al., Tom1p ubiquitin ligase structure, interaction with Spt6p, and function in maintaining normal transcript levels and the stability of chromatin in promoters. To Be Published

Release Date

2025-05-28

Peptides

E3 ubiquitin-protein ligase TOM1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E3 ubiquitin-protein ligase TOM1