SMTL ID : 9cmt.1

The crystal structure of HP1alpha CSD-Agno complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.17 Å

Oligo State

hetero-4-2-mer

Ligands

2 x F6Z: 3',6'-DIHYDROXY-3-OXO-3H-SPIRO[2-BENZOFURAN-1,9'-XANTHENE]-5-CARBOXYLIC ACID(Covalent)

F6Z.1: 9 residues within 4Å: Chain A: R.4, T.19, S.21, S.22, M.26, L.39 Chain C: R.1, Q.2, L.3 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:L.39 Hydrogen bonds: A:R.4, C:L.3 F6Z.2: 12 residues within 4Å: Chain A: H.64 Chain B: E.59, R.60, L.61, T.62 Chain C: K.10, S.12 Chain E: H.64, A.65 Chain F: R.1, Q.2, R.5 6 PLIP interactions: 2 interactions with chain F, 1 interactions with chain B, 3 interactions with chain C Hydrogen bonds: F:R.1, F:R.5, C:S.12 Hydrophobic interactions: B:T.62, C:K.10, C:K.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schaefer, U. et al., Chromatin mimicry by human JC virus. Biorxiv (2024)

Release Date

2025-05-28

Peptides

Chromobox protein homolog 5: ABDE
Agnoprotein: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

D
D

E
E

C
C

F
F

Chromobox protein homolog 5

Agnoprotein