- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-trimer
- Ligands
- 21 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 3 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG-FUC.4: 8 residues within 4Å:- Chain A: V.703, A.704, A.711, E.1070, N.1072
- Chain C: A.891, L.892, Q.893
No protein-ligand interaction detected (PLIP)NAG-NAG-FUC.12: 8 residues within 4Å:- Chain A: A.891, L.892, Q.893
- Chain B: V.703, A.704, A.711, E.1070, N.1072
No protein-ligand interaction detected (PLIP)NAG-NAG-FUC.20: 8 residues within 4Å:- Chain B: A.891, L.892, Q.893
- Chain C: V.703, A.704, A.711, E.1070, N.1072
No protein-ligand interaction detected (PLIP)- 24 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.25: 5 residues within 4Å:- Chain A: N.122, T.124, N.125, E.154, S.155
Ligand excluded by PLIPNAG.26: 5 residues within 4Å:- Chain A: Y.28, N.30, F.59, S.60, N.61
Ligand excluded by PLIPNAG.27: 3 residues within 4Å:- Chain A: N.329, Q.578, L.580
Ligand excluded by PLIPNAG.28: 1 residues within 4Å:- Chain A: N.601
Ligand excluded by PLIPNAG.29: 3 residues within 4Å:- Chain A: H.653, V.654, N.655
Ligand excluded by PLIPNAG.30: 5 residues within 4Å:- Chain A: N.707, N.708, G.1129
- Chain C: I.792, D.794
Ligand excluded by PLIPNAG.31: 6 residues within 4Å:- Chain A: T.108, T.109, N.232, T.234
- Chain B: E.463, R.464
Ligand excluded by PLIPNAG.32: 3 residues within 4Å:- Chain A: N.614, T.616, Q.642
Ligand excluded by PLIPNAG.33: 7 residues within 4Å:- Chain B: N.122, A.123, T.124, N.125, V.127, E.154, V.169
Ligand excluded by PLIPNAG.34: 5 residues within 4Å:- Chain B: Y.28, N.30, F.59, S.60, N.61
Ligand excluded by PLIPNAG.35: 5 residues within 4Å:- Chain B: P.328, N.329, P.577, Q.578, L.580
Ligand excluded by PLIPNAG.36: 1 residues within 4Å:- Chain B: N.601
Ligand excluded by PLIPNAG.37: 3 residues within 4Å:- Chain B: H.653, V.654, N.655
Ligand excluded by PLIPNAG.38: 5 residues within 4Å:- Chain A: I.792, D.794
- Chain B: N.707, N.708, G.1129
Ligand excluded by PLIPNAG.39: 6 residues within 4Å:- Chain B: T.108, T.109, N.232, T.234
- Chain C: E.463, R.464
Ligand excluded by PLIPNAG.40: 5 residues within 4Å:- Chain B: N.614, Q.642, T.643, R.644, G.646
Ligand excluded by PLIPNAG.41: 5 residues within 4Å:- Chain C: N.122, T.124, V.127, E.154, S.155
Ligand excluded by PLIPNAG.42: 5 residues within 4Å:- Chain C: Y.28, N.30, F.59, S.60, N.61
Ligand excluded by PLIPNAG.43: 4 residues within 4Å:- Chain C: N.329, P.577, Q.578, L.580
Ligand excluded by PLIPNAG.44: 1 residues within 4Å:- Chain C: N.601
Ligand excluded by PLIPNAG.45: 3 residues within 4Å:- Chain C: H.653, V.654, N.655
Ligand excluded by PLIPNAG.46: 5 residues within 4Å:- Chain B: I.792, D.794
- Chain C: N.707, N.708, G.1129
Ligand excluded by PLIPNAG.47: 7 residues within 4Å:- Chain A: F.462, E.463, R.464, D.465
- Chain C: T.108, G.230, N.232
Ligand excluded by PLIPNAG.48: 3 residues within 4Å:- Chain C: N.614, Q.642, R.644
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ke, Z. et al., Virion morphology and on-virus spike protein structures of diverse SARS-CoV-2 variants. Embo J. (2024)
- Release Date
- 2024-11-27
- Peptides
- Spike glycoprotein: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
CC
B
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-trimer
- Ligands
- 21 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 3 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
- 24 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ke, Z. et al., Virion morphology and on-virus spike protein structures of diverse SARS-CoV-2 variants. Embo J. (2024)
- Release Date
- 2024-11-27
- Peptides
- Spike glycoprotein: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
CC
B