SMTL ID : 9csj.1 (2 other biounits)

Crystal structure of human glyoxalase domain-containing protein 4 (GLOD4) at 2.33 A resolution.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.33 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 1 residues within 4Å: Chain A: N.293 No protein-ligand interaction detected (PLIP)

3 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: H.9, E.71 Ligands: CL.5, CL.10 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.9, A:E.71, A:E.71 ZN.3: 3 residues within 4Å: Chain A: H.67 Ligands: CL.8, CL.9 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.67 ZN.4: 4 residues within 4Å: Chain A: W.288, H.292 Ligands: CL.6, CL.7 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.292

7 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 8 residues within 4Å: Chain A: H.9, V.11, E.71, R.202, A.204, C.255 Ligands: ZN.2, CL.10 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain A: W.288, H.292 Ligands: ZN.4, CL.7 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain A: W.288, H.292 Ligands: ZN.4, CL.6 Ligand excluded by PLIP CL.8: 7 residues within 4Å: Chain A: F.61, H.67, S.136, D.137, P.138 Ligands: ZN.3, CL.9 Ligand excluded by PLIP CL.9: 4 residues within 4Å: Chain A: H.67, S.136 Ligands: ZN.3, CL.8 Ligand excluded by PLIP CL.10: 6 residues within 4Å: Chain A: H.9, K.56, E.71 Ligands: ZN.2, CL.5, PEG.12 Ligand excluded by PLIP CL.11: 4 residues within 4Å: Chain A: R.25, K.31, V.32, S.273 Ligand excluded by PLIP

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.12: 8 residues within 4Å: Chain A: F.38, W.54, K.56, L.233, D.234, T.235, V.243 Ligands: CL.10 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Griswold-Prenner, I. et al., Crystal structure of apo-Glyoxalase domain-containing protein 4 (apo-GLOD4) at 2.33 A resolution. To Be Published

Release Date

2025-08-13

Peptides

Isoform 2 of Glyoxalase domain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Isoform 2 of Glyoxalase domain-containing protein 4

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