- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ACY: ACETIC ACID(Non-functional Binders)
- 4 x QG7: N-(2-{bis[(pyridin-2-yl)methyl]amino}ethyl)-5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanamide(Non-covalent)
QG7.2: 25 residues within 4Å:- Chain A: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, N.49, A.50, W.79, N.85, A.86, H.87, S.88, T.90, W.92, W.108, L.110, Y.112, L.124, D.128
- Chain C: W.120, A.121
- Ligands: ACY.1, CU.3
13 PLIP interactions:13 interactions with chain A- Hydrophobic interactions: A:W.79, A:W.79, A:W.79, A:L.110, A:L.124
- Hydrogen bonds: A:N.23, A:S.27, A:Y.43, A:S.45, A:N.49, A:S.88, A:S.88, A:D.128
QG7.5: 25 residues within 4Å:- Chain B: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, N.49, A.50, W.79, N.85, A.86, H.87, S.88, T.90, W.92, W.108, L.110, Y.112, L.124, D.128
- Chain D: W.120, A.121
- Ligands: ACY.4, CU.6
12 PLIP interactions:12 interactions with chain B- Hydrophobic interactions: B:W.79, B:W.79, B:W.79, B:L.110, B:L.124
- Hydrogen bonds: B:N.23, B:S.27, B:S.45, B:N.49, B:S.88, B:S.88, B:D.128
QG7.8: 25 residues within 4Å:- Chain A: W.120, A.121
- Chain C: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, N.49, A.50, W.79, N.85, A.86, H.87, S.88, T.90, W.92, W.108, L.110, Y.112, L.124, D.128
- Ligands: ACY.7, CU.9
13 PLIP interactions:13 interactions with chain C- Hydrophobic interactions: C:W.79, C:W.79, C:W.79, C:L.110, C:L.124
- Hydrogen bonds: C:N.23, C:S.27, C:Y.43, C:S.45, C:N.49, C:S.88, C:S.88, C:D.128
QG7.11: 25 residues within 4Å:- Chain B: W.120, A.121
- Chain D: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, N.49, A.50, W.79, N.85, A.86, H.87, S.88, T.90, W.92, W.108, L.110, Y.112, L.124, D.128
- Ligands: ACY.10, CU.12
12 PLIP interactions:12 interactions with chain D- Hydrophobic interactions: D:W.79, D:W.79, D:W.79, D:L.110, D:L.124
- Hydrogen bonds: D:N.23, D:S.27, D:S.45, D:N.49, D:S.88, D:S.88, D:D.128
- 4 x CU: COPPER (II) ION(Non-covalent)
CU.3: 3 residues within 4Å:- Chain A: N.49
- Ligands: ACY.1, QG7.2
No protein-ligand interaction detected (PLIP)CU.6: 3 residues within 4Å:- Chain B: N.49
- Ligands: ACY.4, QG7.5
No protein-ligand interaction detected (PLIP)CU.9: 3 residues within 4Å:- Chain C: N.49
- Ligands: ACY.7, QG7.8
No protein-ligand interaction detected (PLIP)CU.12: 3 residues within 4Å:- Chain D: N.49
- Ligands: ACY.10, QG7.11
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Uyeda, K.S. et al., Selective oxidation of active site aromatic residues in engineered Cu proteins. Chem Sci (2024)
- Release Date
- 2024-12-11
- Peptides
- Streptavidin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ACY: ACETIC ACID(Non-functional Binders)
- 4 x QG7: N-(2-{bis[(pyridin-2-yl)methyl]amino}ethyl)-5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanamide(Non-covalent)
- 4 x CU: COPPER (II) ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Uyeda, K.S. et al., Selective oxidation of active site aromatic residues in engineered Cu proteins. Chem Sci (2024)
- Release Date
- 2024-12-11
- Peptides
- Streptavidin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A