SMTL ID : 9csx.1

matrix metalloproteinase-10 proenzyme

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

monomer

Ligands

2 x IMD: IMIDAZOLE(Non-covalent)

IMD.1: 7 residues within 4Å: Chain A: E.138, M.142, G.172, L.173, D.176 Ligands: CA.4, ZN.10 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.138 IMD.2: 2 residues within 4Å: Chain A: E.67 Ligands: ZN.11 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.67

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.3: 2 residues within 4Å: Chain A: E.215, R.232 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.232

4 x CA: CALCIUM ION(Non-covalent)

CA.4: 6 residues within 4Å: Chain A: D.140, M.142, G.172, Y.174, D.176 Ligands: IMD.1 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.140, A:G.172, A:Y.174, A:D.176, H2O.1, H2O.2 CA.5: 8 residues within 4Å: Chain A: D.157, G.158, G.160, H.161, S.162, L.163, D.180, E.183 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:D.157, A:G.158, A:G.160, A:S.162, A:D.180, A:E.183 CA.6: 6 residues within 4Å: Chain A: T.104, D.106, D.181, E.183, K.184, W.185 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.106, A:D.181, A:D.181, A:E.183, H2O.6 CA.7: 2 residues within 4Å: Chain A: R.109, D.110 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.110, H2O.7

4 x ZN: ZINC ION(Non-covalent)

ZN.8: 5 residues within 4Å: Chain A: H.150, D.152, H.165, Y.167, H.178 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.150, A:D.152, A:H.165, A:H.178 ZN.9: 5 residues within 4Å: Chain A: C.74, V.76, H.200, H.204, H.210 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.74, A:H.200, A:H.204, A:H.210 ZN.10: 3 residues within 4Å: Chain A: E.138, G.172 Ligands: IMD.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.138, A:E.138 ZN.11: 2 residues within 4Å: Chain A: E.67 Ligands: IMD.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.67, A:E.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Isiorho, E.A., Matrix metalloproteinase-10 (MMP-10) proenzyme. To Be Published

Release Date

2025-08-13

Peptides

Stromelysin-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Stromelysin-2