SMTL ID : 9csy.1 (2 other biounits)

SARS-CoV-2 papain-like protease (PLpro) bound to PF-07957472

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x 01: 2-methyl-5-(4-methylpiperazin-1-yl)-N-{1-[(2P)-2-(1-methyl-1H-pyrazol-4-yl)quinolin-4-yl]cyclopropyl}benzamide

01.1: 18 residues within 4Å: Chain A: K.160, L.165, G.166, D.167, R.169, E.170, M.211, P.250, P.251, Y.267, G.269, N.270, Y.271, Q.272, C.273, Y.276, T.304 Ligands: TFA.2 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:D.167, A:P.250, A:P.250, A:Y.267, A:Y.267, A:Y.267, A:Y.271, A:Y.271, A:Q.272 Hydrogen bonds: A:D.167, A:Q.272 Water bridges: A:G.269 Salt bridges: A:E.170 pi-Stacking: A:Y.271

1 x TFA: trifluoroacetic acid

TFA.2: 3 residues within 4Å: Chain A: E.170, Y.271 Ligands: 01.1 No protein-ligand interaction detected (PLIP)

1 x ZN: ZINC ION

ZN.3: 4 residues within 4Å: Chain A: C.192, C.195, C.227, C.229 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.192, A:C.195, A:C.227, A:C.229

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garnsey, M.R. et al., Discovery of SARS-CoV-2 papain-like protease (PL pro ) inhibitors with efficacy in a murine infection model. Sci Adv (2024)

Release Date

2024-10-02

Peptides

Papain-like protease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Papain-like protease

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