SMTL ID : 9cth.1

Preliminary map of the Prothrombin-prothrombinase complex on nano discs

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: P.137, P.138, F.179, E.249, N.269 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.137, A:F.179 NAG.2: 7 residues within 4Å: Chain A: L.202, M.203, N.211, K.286, Q.289, A.290, G.291 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.202, A:K.286, A:Q.289, A:Q.289 NAG.3: 1 residues within 4Å: Chain B: N.130 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.130 NAG.4: 3 residues within 4Å: Chain B: H.184, M.191, N.437 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.184 NAG.5: 1 residues within 4Å: Chain E: N.373 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.373 NAG.6: 4 residues within 4Å: Chain E: H.76, N.78, E.111, N.112 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stojanovski, B.M. et al., The Prothrombin-Prothrombinase Interaction. Subcell Biochem (2024)

Release Date

2024-08-07

Peptides

Activated Factor V (FVa) heavy chain: A
Activated Factor V (FVa) light chain: B
Activated Factor X light chain: C
Activated Factor X heavy chain: D
Prothrombin: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

C
B

D
C

E
D

Activated Factor V (FVa) heavy chain

Activated Factor V (FVa) light chain

Activated Factor X light chain

Activated Factor X heavy chain

Prothrombin

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