SMTL ID : 9cv2.1

Crystal structure of the metallo-beta-lactamase VIM-20 with D-captopril

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.57 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.91, H.93, H.156 Ligands: ZN.2, MCO.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.91, A:H.93, A:H.156 ZN.2: 6 residues within 4Å: Chain A: D.95, R.96, C.175, H.217 Ligands: ZN.1, MCO.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.95, A:C.175, A:H.217 ZN.3: 1 residues within 4Å: Chain A: H.228 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.228, H2O.5, H2O.5

1 x MCO: 1-(3-MERCAPTO-2-METHYL-PROPIONYL)-PYRROLIDINE-2-CARBOXYLIC ACID(Non-covalent)

MCO.4: 11 residues within 4Å: Chain A: Y.44, W.64, H.93, D.95, H.156, C.175, R.182, N.187, H.217 Ligands: ZN.1, ZN.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.44, A:Y.44, A:W.64, A:W.64 Hydrogen bonds: A:N.187, A:N.187 Salt bridges: A:R.182, A:H.217

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Silwal, S.B. et al., Mutation of an active site-adjacent residue in VIM indirectly dictates interactions with and blunts inhibition by D-captopril. J.Inorg.Biochem. (2025)

Release Date

2025-07-09

Peptides

Metallo-beta-lactamase VIM-20: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Metallo-beta-lactamase VIM-20

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