SMTL ID : 9cx8.1

Crystal structure of Human FN3K in apo-state

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

homo-dimer

Ligands

11 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: A.1, M.2 Chain B: R.45 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:M.2 Water bridges: A:E.3, B:R.45 Salt bridges: B:R.45 SO4.2: 3 residues within 4Å: Chain A: K.95, S.96 Chain B: R.30 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Salt bridges: B:R.30 Hydrogen bonds: A:S.96, A:S.96 SO4.3: 4 residues within 4Å: Chain A: E.170, R.279, L.283, R.287 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.279, A:R.279 Salt bridges: A:R.279, A:R.287 SO4.4: 3 residues within 4Å: Chain A: R.177, K.181, L.290 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.177, A:K.181 SO4.5: 4 residues within 4Å: Chain A: P.253, G.254, F.255, D.256 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.254, A:D.256 Water bridges: A:G.254, A:F.255, A:F.255 SO4.6: 2 residues within 4Å: Chain A: P.238, R.239 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.239 Water bridges: A:S.240 SO4.15: 5 residues within 4Å: Chain B: A.1, M.2, E.3, G.235, G.236 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:M.2, B:E.3, B:G.236 Water bridges: B:A.1, B:E.3, B:E.3 SO4.16: 3 residues within 4Å: Chain B: R.276, R.279, S.280 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.276 Water bridges: B:R.279, B:R.279 Salt bridges: B:R.276, B:R.279 SO4.17: 2 residues within 4Å: Chain B: Q.257, R.288 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.257 Salt bridges: B:R.288 SO4.18: 6 residues within 4Å: Chain B: G.24, C.25, I.26, S.27, K.42, D.216 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:G.24, B:C.25, B:I.26, B:S.27 Water bridges: B:G.22, B:D.216, B:D.216 Salt bridges: B:K.42 SO4.19: 6 residues within 4Å: Chain B: N.115, S.120, Y.121, V.122, D.123, V.192 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.115, B:N.115

16 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 5 residues within 4Å: Chain A: E.28, F.40, K.42, Y.215, D.216 Ligand excluded by PLIP EDO.8: 3 residues within 4Å: Chain A: V.57, P.74, M.75 Ligand excluded by PLIP EDO.9: 6 residues within 4Å: Chain A: H.112, L.113, A.194, S.224, I.249 Ligands: EDO.10 Ligand excluded by PLIP EDO.10: 4 residues within 4Å: Chain A: Q.116, E.190, V.192 Ligands: EDO.9 Ligand excluded by PLIP EDO.11: 8 residues within 4Å: Chain A: F.127, H.128, T.129, V.130, Q.138, V.139, N.140, E.141 Ligand excluded by PLIP EDO.12: 3 residues within 4Å: Chain A: W.201, F.234, H.270 Ligand excluded by PLIP EDO.13: 4 residues within 4Å: Chain A: R.45, L.80, P.81 Chain B: M.2 Ligand excluded by PLIP EDO.14: 5 residues within 4Å: Chain A: G.67, L.68, V.69, R.70, Q.107 Ligand excluded by PLIP EDO.20: 5 residues within 4Å: Chain A: F.18, G.19, G.20 Chain B: A.31, H.91 Ligand excluded by PLIP EDO.21: 6 residues within 4Å: Chain B: H.112, L.113, V.192, A.194, S.224, I.249 Ligand excluded by PLIP EDO.22: 2 residues within 4Å: Chain B: P.238, R.239 Ligand excluded by PLIP EDO.23: 6 residues within 4Å: Chain B: K.251, A.252, P.253, G.254, F.255, D.256 Ligand excluded by PLIP EDO.24: 6 residues within 4Å: Chain A: I.26 Chain B: D.199, W.201, N.204, I.230 Ligands: EDO.27 Ligand excluded by PLIP EDO.25: 2 residues within 4Å: Chain B: R.177, R.287 Ligand excluded by PLIP EDO.26: 4 residues within 4Å: Chain B: R.7, T.14, L.15, R.16 Ligand excluded by PLIP EDO.27: 6 residues within 4Å: Chain B: I.26, G.134, N.269, H.273, F.274 Ligands: EDO.24 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garg, A. et al., Crystal structure of Human FN3K in apo-state. To Be Published

Release Date

2024-12-18

Peptides

Fructosamine-3-kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Fructosamine-3-kinase

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