SMTL ID : 9d11.3 (2 other biounits)

Smarca2 Bromodomain in complex with compound 22

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.68 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 1 residues within 4Å: Chain A: H.72 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.72

1 x 01: (12'S)-4'-chloro-10'-(piperidin-4-yl)-5'H-spiro[cyclohexane-1,7'-indolo[1,2-a]quinazolin]-5'-one

01.2: 14 residues within 4Å: Chain A: V.39, F.40, Q.42, L.43, P.44, L.49, Y.52, V.60, L.87, N.90, A.91, F.94, N.95, I.101 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.49, A:F.94, A:I.101 Hydrogen bonds: A:N.95 pi-Stacking: A:F.40, A:Y.52 Halogen bonds: A:L.87

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 6 residues within 4Å: Chain A: L.55, I.56, R.57, H.89, N.90, T.93 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:R.57 Hydrogen bonds: A:T.93 Water bridges: A:R.57, A:R.57 Salt bridges: A:R.57, A:H.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leng, L. et al., Discovery of High-Affinity SMARCA2/4 Bromodomain Ligands and Development of Potent and Exceptionally Selective SMARCA2 PROTAC Degraders. J.Med.Chem. (2025)

Release Date

2025-01-15

Peptides

Isoform Short of Probable global transcription activator SNF2L2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Isoform Short of Probable global transcription activator SNF2L2

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