SMTL ID : 9d1l.1

Lucilia cuprina alpha esterase 7 directed evolution round 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

monomer

Ligands

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 8 residues within 4Å: Chain A: G.135, G.136, I.140, G.141, E.142, M.147, Y.148, Y.457 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.135, A:Y.457 EDO.3: 2 residues within 4Å: Chain A: D.87 Ligands: MPD.11 No protein-ligand interaction detected (PLIP) EDO.4: 5 residues within 4Å: Chain A: L.353, T.356, D.410, M.413, V.466 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.356 EDO.5: 4 residues within 4Å: Chain A: T.125, R.127, P.128, D.157 3 PLIP interactions: 3 interactions with chain A Water bridges: A:D.157, A:D.157, A:D.157 EDO.8: 5 residues within 4Å: Chain A: N.24, H.91, H.144, R.145, D.146 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.145, A:D.146, A:D.146 Water bridges: A:N.24, A:H.91, A:H.91, A:R.145, A:R.145 EDO.10: 5 residues within 4Å: Chain A: D.53, S.54, N.119, I.154, K.155 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.54, A:S.54, A:N.119, A:I.154 EDO.14: 4 residues within 4Å: Chain A: E.316, Y.318, Q.319, P.326 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.316 Water bridges: A:Q.319 EDO.15: 5 residues within 4Å: Chain A: K.12, K.16, I.454, R.464, L.483 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.464, A:R.464 EDO.16: 5 residues within 4Å: Chain A: S.450, E.451, D.452, K.467, R.492 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.451, A:R.492 Water bridges: A:S.450, A:R.492 EDO.18: 4 residues within 4Å: Chain A: R.499, G.520, D.543, E.544 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.499, A:R.499

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

3 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.6: 7 residues within 4Å: Chain A: D.137, S.218, W.251, M.308, F.309, F.355, F.421 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.251, A:F.421 Hydrogen bonds: A:S.218, A:S.218 Water bridges: A:G.136, A:D.137 MPD.7: 3 residues within 4Å: Chain A: Y.25, R.26, T.28 No protein-ligand interaction detected (PLIP) MPD.11: 3 residues within 4Å: Chain A: W.82, R.86 Ligands: EDO.3 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.82, A:R.86 Water bridges: A:D.87

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.9: 3 residues within 4Å: Chain A: K.276, D.277, E.280 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.280, A:F.281 PEG.12: 6 residues within 4Å: Chain A: Y.25, T.28, V.45, R.47, C.89, N.90 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.28, A:R.47 Water bridges: A:N.90 PEG.17: 7 residues within 4Å: Chain A: H.426, Q.430, L.431, Y.434, E.560, R.567, F.570 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.430, A:R.567 Water bridges: A:Q.430, A:L.431, A:Y.434, A:F.570

1 x BTB: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

BTB.13: 6 residues within 4Å: Chain A: K.334, F.433, Y.434, H.435, T.436, S.437 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.433, A:H.435, A:H.435

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Frkic, R.L. et al., Lucilia cuprina alpha esterase 7 directed evolution round 1. To Be Published

Release Date

2025-08-13

Peptides

Carboxylic ester hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Carboxylic ester hydrolase