SMTL ID : 9d1p.1

Lucilia cuprina alpha esterase 7 directed evolution round 5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 1 residues within 4Å: Chain A: Y.51 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.489

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 7 residues within 4Å: Chain A: D.137, S.218, W.251, F.309, F.355, Y.420, F.421 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.251, A:F.309, A:F.355, A:F.421 Water bridges: A:D.137, A:S.218 MPD.3: 3 residues within 4Å: Chain A: Y.25, R.26, T.28 No protein-ligand interaction detected (PLIP)

2 x BTB: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

BTB.4: 3 residues within 4Å: Chain A: N.434, H.435, T.436 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.435 BTB.5: 4 residues within 4Å: Chain A: V.402, T.403, G.404, E.405 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.402 Water bridges: A:T.403

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 3 residues within 4Å: Chain A: S.349, Y.350, D.414 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.414 Water bridges: A:D.410

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 5 residues within 4Å: Chain A: D.53, S.54, N.119, I.154, K.155 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.54, A:S.54 Water bridges: A:D.53, A:D.53 EDO.8: 4 residues within 4Å: Chain A: E.370, E.405, T.406, P.407 No protein-ligand interaction detected (PLIP) EDO.9: 7 residues within 4Å: Chain A: G.135, G.136, I.140, G.141, E.142, Y.148, Y.457 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.142, A:Y.457, A:Y.457

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Frkic, R.L. et al., Lucilia cuprina alpha esterase 7 directed evolution round 5. To Be Published

Release Date

2025-08-13

Peptides

Carboxylic ester hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Carboxylic ester hydrolase