SMTL ID : 9d1r.1

Lucilia cuprina alpha esterase 7 directed evolution round 7

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

monomer

Ligands

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: L.353, T.356, D.410, M.413, V.466 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.356 EDO.2: 4 residues within 4Å: Chain A: T.125, R.127, P.128, D.157 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.157 Water bridges: A:T.125, A:R.127, A:D.157, A:D.157 EDO.4: 5 residues within 4Å: Chain A: N.24, H.91, H.144, R.145, D.146 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.146, A:D.146 Water bridges: A:N.24, A:E.59, A:R.145, A:R.145, A:R.145 EDO.5: 5 residues within 4Å: Chain A: D.53, S.54, N.119, I.154, K.155 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.54, A:N.119, A:I.154 EDO.7: 5 residues within 4Å: Chain A: E.316, P.317, Y.318, Q.319, P.326 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.316 EDO.9: 2 residues within 4Å: Chain A: D.568, L.569 No protein-ligand interaction detected (PLIP) EDO.10: 5 residues within 4Å: Chain A: N.120, P.123, E.124, R.127, D.157 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:E.124, A:R.127, A:D.157 Water bridges: A:N.119, A:N.120, A:N.120, A:N.120, A:T.125 EDO.12: 8 residues within 4Å: Chain A: G.135, G.136, I.140, G.141, E.142, M.147, Y.148, Y.457 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.135, A:Y.457 EDO.13: 3 residues within 4Å: Chain A: K.286, Q.288, D.289 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.289 Water bridges: A:Q.288, A:Q.288 EDO.14: 9 residues within 4Å: Chain A: G.60, H.91, K.92, D.93, Y.113, S.115, N.143, H.144, Q.164 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.60, A:S.115, A:Q.164, A:Q.164 Water bridges: A:N.143

3 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.3: 7 residues within 4Å: Chain A: D.137, S.218, W.251, F.309, F.355, Y.420, F.421 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.251, A:F.309, A:F.355 Water bridges: A:D.137, A:S.218 MPD.6: 2 residues within 4Å: Chain A: W.82, R.86 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.82, A:R.86 Water bridges: A:D.87 MPD.11: 3 residues within 4Å: Chain A: Y.25, R.26, T.28 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.25

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Frkic, R.L. et al., Lucilia cuprina alpha esterase 7 directed evolution round 7. To Be Published

Release Date

2025-08-13

Peptides

Carboxylic ester hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Carboxylic ester hydrolase