SMTL ID : 9d1s.1

Lucilia cuprina alpha esterase 7 directed evolution round 8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

monomer

Ligands

5 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 6 residues within 4Å: Chain A: D.137, S.218, W.251, F.309, F.355, Y.420 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.251, A:F.309, A:F.355 Hydrogen bonds: A:Y.420 MPD.2: 3 residues within 4Å: Chain A: Y.25, R.26, T.28 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Y.25 MPD.5: 6 residues within 4Å: Chain A: E.316, P.317, Y.318, Q.319, P.326, K.327 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Q.319 Hydrogen bonds: A:E.316, A:P.326 MPD.6: 3 residues within 4Å: Chain A: K.537, I.548, D.549 No protein-ligand interaction detected (PLIP) MPD.11: 4 residues within 4Å: Chain A: S.349, Y.350, R.445, K.555 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.414 Water bridges: A:S.349

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: D.53, S.54, N.119, I.154, K.155 Ligands: ACT.9 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.54, A:N.119, A:I.154 EDO.4: 3 residues within 4Å: Chain A: K.334, T.335, H.435 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.435 EDO.7: 3 residues within 4Å: Chain A: Q.430, N.434, F.570 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.434, A:R.567 EDO.8: 2 residues within 4Å: Chain A: K.286, Q.288 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Q.288 EDO.10: 1 residues within 4Å: Chain A: D.83 2 PLIP interactions: 2 interactions with chain A Water bridges: A:W.82, A:W.82 EDO.12: 4 residues within 4Å: Chain A: V.402, T.403, G.404 Ligands: GOL.13 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.403 EDO.14: 7 residues within 4Å: Chain A: G.135, G.136, I.140, G.141, E.142, Y.148, Y.457 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.142, A:Y.457 EDO.15: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.9: 4 residues within 4Å: Chain A: N.119, N.120, R.127 Ligands: EDO.3 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:N.120 Hydrogen bonds: A:N.120 Water bridges: A:N.119

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.13: 4 residues within 4Å: Chain A: T.403, G.404, E.405 Ligands: EDO.12 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.403 Water bridges: A:E.405

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Frkic, R.L. et al., Lucilia cuprina alpha esterase 7 directed evolution round 8. To Be Published

Release Date

2025-08-13

Peptides

Carboxylic ester hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Carboxylic ester hydrolase