SMTL ID : 9d1t.1

Lucilia cuprina alpha esterase 7 directed evolution round 9

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

6 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 8 residues within 4Å: Chain A: D.137, S.218, W.251, V.308, F.309, F.355, Y.420, F.421 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.251, A:F.309, A:F.421 MPD.2: 2 residues within 4Å: Chain A: Y.25, T.28 No protein-ligand interaction detected (PLIP) MPD.3: 9 residues within 4Å: Chain A: G.135, G.136, Y.148, E.217, S.218, W.457, M.460, A.472, L.475 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.457, A:A.472, A:L.475 Hydrogen bonds: A:G.135 Water bridges: A:Y.148, A:E.217 MPD.4: 4 residues within 4Å: Chain A: V.402, T.403, G.404, E.405 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:E.405 MPD.5: 5 residues within 4Å: Chain A: E.370, K.398, E.405, T.406, P.407 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:T.406 Hydrogen bonds: A:E.370, A:E.405 MPD.6: 5 residues within 4Å: Chain A: E.316, P.317, Y.318, Q.319, P.326 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.326 Water bridges: A:Q.319

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 4 residues within 4Å: Chain A: M.487, P.488, E.490, S.491 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.490 Water bridges: A:D.452, A:E.490 EDO.8: 3 residues within 4Å: Chain A: D.53, K.155, Y.494 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.53 Water bridges: A:Y.494, A:E.498 EDO.9: 4 residues within 4Å: Chain A: R.499, G.520, D.543, E.544 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.499, A:R.499 Water bridges: A:D.543 EDO.10: 3 residues within 4Å: Chain A: N.274, K.276, D.277 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.277 Water bridges: A:N.274, A:K.276 EDO.11: 5 residues within 4Å: Chain A: S.253, T.254, Q.255, V.315, H.328 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.253 EDO.12: 5 residues within 4Å: Chain A: V.5, S.6, E.9, I.459, S.462 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.5, A:S.6, A:S.462 Water bridges: A:S.462 EDO.13: 4 residues within 4Å: Chain A: G.235, W.337, S.340, I.341 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.340 Water bridges: A:R.234

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Frkic, R.L. et al., Lucilia cuprina alpha esterase 7 directed evolution round 9. To Be Published

Release Date

2025-08-13

Peptides

Carboxylic ester hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Carboxylic ester hydrolase