SMTL ID : 9d3m.1

Two HMGN2s in complex with the nucleosome

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 2.90 Å

Oligo State

hetero-2-2-2-2-mer

Ligands

2 x ARG- ARG- SER- ALA- ARG: Non-histone chromosomal protein HMG-17(Non-covalent)

ARG-ARG-SER-ALA-ARG.1: 9 residues within 4Å: Chain E: E.42, Y.43, A.46, E.47, E.50, E.78 Chain F: Q.17, V.18, L.76 9 PLIP interactions: 4 interactions with chain E, 5 interactions with chain F Hydrogen bonds: E:Y.43, F:Q.17, F:Q.17, F:Q.17 Salt bridges: E:E.42, E:E.47, E:D.76, F:E.83 Hydrophobic interactions: F:V.18 ARG-ARG-SER-ALA-ARG.2: 14 residues within 4Å: Chain I: E.42, Y.43, A.46, E.47, E.50, D.76, E.78 Chain J: K.16, Q.17, V.18, E.75, L.76, H.79, E.83 11 PLIP interactions: 6 interactions with chain I, 5 interactions with chain J Hydrogen bonds: I:Y.43, I:E.50, J:K.16, J:K.16, J:Q.17, J:Q.17 Salt bridges: I:E.42, I:E.47, I:D.76, I:E.78, J:E.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alegrio-Louro, J. et al., Structural basis of nucleosome recognition by the conserved Dsup and HMGN nucleosome-binding motif. Genes Dev. (2025)

Release Date

2025-08-13

Peptides

Histone H3.2: CG
Histone H4: DH
Histone H2A type 2-A: EI
Histone H2B type 1-M: FJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

G
E

D
B

H
F

E
C

I
G

F
D

J
H

Histone H3.2

Histone H4

Histone H2A type 2-A

Histone H2B type 1-M

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