SMTL ID : 9d88.1

Gag CA-SP1 immature lattice from enveloped and perforated virus like particles

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-18-mer

Ligands

1 x IHP: INOSITOL HEXAKISPHOSPHATE(Non-covalent)

IHP.1: 12 residues within 4Å: Chain A: K.148, K.217 Chain D: K.148, K.217 Chain G: K.148, K.217 Chain J: K.148, K.217 Chain M: K.148, K.217 Chain P: K.148, K.217 23 PLIP interactions: 5 interactions with chain M, 3 interactions with chain G, 4 interactions with chain J, 3 interactions with chain A, 4 interactions with chain D, 4 interactions with chain P Salt bridges: M:K.148, M:K.148, M:K.217, M:K.217, M:K.217, G:K.148, G:K.217, G:K.217, J:K.148, J:K.148, J:K.217, J:K.217, A:K.148, A:K.217, A:K.217, D:K.148, D:K.217, D:K.217, D:K.217, P:K.148, P:K.148, P:K.217, P:K.217

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, C. et al., Structural insights into inhibitor mechanisms on immature HIV-1 Gag lattice revealed by high-resolution in situ single-particle cryo-EM. Biorxiv (2024)

Release Date

2024-10-30

Peptides

Gag polyprotein: ABCDEFGHIJKLMNOPQR

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

Gag polyprotein

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